Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04740

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,036,554	+		HSERO_RS04735	0.82	+1.1
1,036,628	-		HSERO_RS04735	0.88	+0.7
1,036,630	-		HSERO_RS04735	0.88	+0.1
1,036,789	+				-1.6
1,036,789	+				+0.6
1,036,805	+				-1.5
1,036,878	+				-1.4
1,036,896	+				+1.3
1,036,952	+				-1.5
1,036,954	+				-0.2
1,036,960	-				+0.9
1,036,991	+				+0.1
1,037,097	+				-0.1
1,037,107	+				+2.1
1,037,139	-				+1.5
1,037,353	-				-0.3
1,037,424	+				+0.5
1,037,622	+		HSERO_RS04740	0.31	+0.9
1,037,696	-		HSERO_RS04740	0.39	-2.1
1,037,702	+		HSERO_RS04740	0.39	+0.2
1,037,785	+		HSERO_RS04740	0.48	-0.5
1,037,916	+		HSERO_RS04740	0.63	+2.4
1,037,969	-		HSERO_RS04740	0.68	+0.6
1,038,312	+				-0.3
1,038,420	+				-0.7
1,038,442	+				-0.1
1,038,581	-		HSERO_RS04745	0.11	-0.2
1,038,597	+		HSERO_RS04745	0.12	-0.2
1,038,681	+		HSERO_RS04745	0.16	+1.0
1,038,709	-		HSERO_RS04745	0.17	+1.5
1,038,835	-		HSERO_RS04745	0.23	+0.4
1,039,226	+		HSERO_RS04745	0.41	-0.2