Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04660

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,014,605	-		HSERO_RS04655	0.45	+0.7
1,014,683	+		HSERO_RS04655	0.51	-1.7
1,014,686	-		HSERO_RS04655	0.52	-0.4
1,014,802	+		HSERO_RS04655	0.61	+0.5
1,014,807	+		HSERO_RS04655	0.61	-0.0
1,015,015	-		HSERO_RS04655	0.79	+0.3
1,015,020	-		HSERO_RS04655	0.79	-0.7
1,015,040	+		HSERO_RS04655	0.81	+0.1
1,015,188	+				-0.0
1,015,188	+				-0.0
1,015,188	+				+1.1
1,015,196	-				+0.8
1,015,207	+				+2.4
1,015,265	+				-3.4
1,015,278	-				+0.1
1,015,388	-		HSERO_RS04660	0.14	-1.7
1,015,424	+		HSERO_RS04660	0.19	-1.0
1,015,483	+		HSERO_RS04660	0.28	+0.7
1,015,499	+		HSERO_RS04660	0.31	-0.3
1,015,515	+		HSERO_RS04660	0.33	-1.5
1,015,633	-		HSERO_RS04660	0.51	-0.5
1,015,696	-		HSERO_RS04660	0.61	-0.5
1,015,801	+		HSERO_RS04660	0.77	-0.3
1,015,801	+		HSERO_RS04660	0.77	-0.5
1,015,847	-		HSERO_RS04660	0.83	-0.4
1,015,992	+				+0.3
1,015,997	+				-0.0
1,015,997	+				+1.3
1,016,002	+				+0.1
1,016,002	+				-0.7
1,016,024	+				+1.2
1,016,029	+				-0.1
1,016,057	+				-0.5
1,016,277	-		HSERO_RS04665	0.43	-2.2
1,016,438	+		HSERO_RS04665	0.70	+0.7
1,016,438	+		HSERO_RS04665	0.70	-0.1
1,016,580	+				-1.0
1,016,696	+				+0.2
1,016,730	+				-3.1
1,016,738	-				+0.2
1,016,797	-				+0.4