Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotides HSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides HSERO_RS04425 and HSERO_RS04430 are separated by 0 nucleotides
HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295
_RS04415
HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046
_RS04420
HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833
_RS04425
HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063
_RS04430
Position (kb) 976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand at 975.171 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.183 kb on + strand, within HSERO_RS04415 at 975.301 kb on + strand at 975.310 kb on - strand at 975.310 kb on - strand at 975.335 kb on - strand at 975.352 kb on - strand at 975.396 kb on + strand at 975.396 kb on + strand at 975.404 kb on - strand at 975.404 kb on - strand at 976.066 kb on + strand at 976.082 kb on + strand at 976.089 kb on + strand at 976.089 kb on + strand at 976.089 kb on - strand at 976.091 kb on + strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.097 kb on - strand at 976.099 kb on - strand at 976.099 kb on - strand at 976.127 kb on + strand at 976.127 kb on + strand at 976.136 kb on - strand at 976.141 kb on + strand at 976.141 kb on - strand at 976.141 kb on - strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.149 kb on + strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.168 kb on - strand at 976.168 kb on - strand at 976.186 kb on + strand at 976.196 kb on + strand at 976.199 kb on - strand at 976.199 kb on - strand at 976.201 kb on - strand at 976.206 kb on + strand at 976.220 kb on + strand at 976.228 kb on - strand at 976.229 kb on - strand at 976.239 kb on + strand, within HSERO_RS04425 at 976.239 kb on + strand, within HSERO_RS04425 at 976.264 kb on - strand, within HSERO_RS04425 at 976.273 kb on + strand, within HSERO_RS04425 at 976.281 kb on - strand, within HSERO_RS04425 at 976.285 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.308 kb on - strand, within HSERO_RS04425 at 976.329 kb on + strand, within HSERO_RS04425 at 976.336 kb on - strand, within HSERO_RS04425 at 976.337 kb on - strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.363 kb on - strand, within HSERO_RS04425 at 976.410 kb on - strand, within HSERO_RS04425 at 976.422 kb on + strand, within HSERO_RS04425 at 976.434 kb on + strand, within HSERO_RS04425 at 976.436 kb on + strand, within HSERO_RS04425 at 976.443 kb on + strand, within HSERO_RS04425 at 976.451 kb on - strand, within HSERO_RS04425 at 976.469 kb on - strand, within HSERO_RS04425 at 976.471 kb on + strand, within HSERO_RS04425 at 976.479 kb on - strand, within HSERO_RS04425 at 976.490 kb on - strand, within HSERO_RS04425 at 976.498 kb on + strand, within HSERO_RS04425 at 976.506 kb on - strand, within HSERO_RS04425 at 976.537 kb on - strand, within HSERO_RS04425 at 976.575 kb on + strand, within HSERO_RS04425 at 976.638 kb on + strand, within HSERO_RS04425 at 976.640 kb on - strand, within HSERO_RS04425 at 976.646 kb on - strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.747 kb on + strand, within HSERO_RS04425 at 976.751 kb on + strand, within HSERO_RS04425 at 976.752 kb on + strand, within HSERO_RS04425 at 976.767 kb on - strand at 976.832 kb on + strand at 976.841 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.888 kb on + strand at 976.888 kb on + strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.924 kb on + strand at 976.933 kb on - strand at 976.943 kb on + strand at 976.979 kb on - strand, within HSERO_RS04430 at 977.008 kb on - strand at 977.008 kb on - strand, within HSERO_RS04430 at 977.268 kb on - strand, within HSERO_RS04430 at 977.312 kb on - strand, within HSERO_RS04430 at 977.361 kb on + strand, within HSERO_RS04430 at 977.474 kb on + strand, within HSERO_RS04430 at 977.547 kb on + strand, within HSERO_RS04430 at 977.603 kb on - strand, within HSERO_RS04430 at 977.626 kb on + strand, within HSERO_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 975,171 - HSERO_RS04415 0.49 +1.5 975,171 - HSERO_RS04415 0.49 -1.1 975,171 - -0.2 975,171 - HSERO_RS04415 0.49 +0.9 975,173 - HSERO_RS04415 0.49 +0.2 975,173 - HSERO_RS04415 0.49 -0.1 975,173 - HSERO_RS04415 0.49 +1.1 975,183 + HSERO_RS04415 0.53 +0.0 975,301 + +0.3 975,310 - +0.8 975,310 - -1.5 975,335 - -0.4 975,352 - +0.5 975,396 + +0.1 975,396 + -2.1 975,404 - +0.6 975,404 - -0.7 976,066 + +1.4 976,082 + +0.5 976,089 + +0.5 976,089 + +1.0 976,089 - -0.5 976,091 + -1.6 976,094 - -0.5 976,094 - -1.7 976,094 - -0.4 976,097 - -2.1 976,099 - +0.3 976,099 - +2.1 976,127 + -0.8 976,127 + -0.0 976,136 - -0.6 976,141 + -0.4 976,141 - +0.4 976,141 - -0.2 976,147 + -0.0 976,147 + -0.4 976,147 + +0.2 976,147 + +0.2 976,147 + -0.2 976,147 + -0.2 976,147 + -1.2 976,147 + -0.4 976,147 + -0.4 976,147 + -0.5 976,147 + +0.7 976,147 + +0.2 976,147 + -0.1 976,149 + -0.6 976,155 - -0.1 976,155 - +1.5 976,155 - +2.4 976,155 - -0.5 976,155 - +0.4 976,155 - -0.6 976,155 - +0.6 976,155 - +0.3 976,155 - +0.5 976,155 - +0.3 976,155 - +0.4 976,155 - -0.4 976,168 - -1.0 976,168 - -0.0 976,186 + +0.7 976,196 + -2.6 976,199 - +0.2 976,199 - -1.0 976,201 - +0.0 976,206 + -1.3 976,220 + -0.6 976,228 - +0.9 976,229 - +0.7 976,239 + HSERO_RS04425 0.11 +0.4 976,239 + HSERO_RS04425 0.11 +0.8 976,264 - HSERO_RS04425 0.14 -0.2 976,273 + HSERO_RS04425 0.16 -3.3 976,281 - HSERO_RS04425 0.17 +0.5 976,285 + HSERO_RS04425 0.18 -0.7 976,292 + HSERO_RS04425 0.19 +1.2 976,292 + HSERO_RS04425 0.19 -2.7 976,292 + HSERO_RS04425 0.19 +0.5 976,300 - HSERO_RS04425 0.20 -0.7 976,300 - HSERO_RS04425 0.20 -0.7 976,300 - HSERO_RS04425 0.20 -0.2 976,308 - HSERO_RS04425 0.21 +1.6 976,329 + HSERO_RS04425 0.24 +0.0 976,336 - HSERO_RS04425 0.25 -0.2 976,337 - HSERO_RS04425 0.25 -1.9 976,355 + HSERO_RS04425 0.28 +3.1 976,355 + HSERO_RS04425 0.28 -0.7 976,363 - HSERO_RS04425 0.29 +0.6 976,410 - HSERO_RS04425 0.36 +1.4 976,422 + HSERO_RS04425 0.38 -0.1 976,434 + HSERO_RS04425 0.40 +0.2 976,436 + HSERO_RS04425 0.40 -0.1 976,443 + HSERO_RS04425 0.41 +0.1 976,451 - HSERO_RS04425 0.42 +0.1 976,469 - HSERO_RS04425 0.45 -0.4 976,471 + HSERO_RS04425 0.45 +0.6 976,479 - HSERO_RS04425 0.47 -1.5 976,490 - HSERO_RS04425 0.48 +0.2 976,498 + HSERO_RS04425 0.50 +0.2 976,506 - HSERO_RS04425 0.51 -2.0 976,537 - HSERO_RS04425 0.55 -0.8 976,575 + HSERO_RS04425 0.61 +0.4 976,638 + HSERO_RS04425 0.71 +5.1 976,640 - HSERO_RS04425 0.71 -2.9 976,646 - HSERO_RS04425 0.72 -0.2 976,685 + HSERO_RS04425 0.78 -0.4 976,685 + HSERO_RS04425 0.78 +0.7 976,687 + HSERO_RS04425 0.78 -0.1 976,687 + HSERO_RS04425 0.78 -0.6 976,693 - HSERO_RS04425 0.79 -0.7 976,693 - HSERO_RS04425 0.79 +0.1 976,747 + HSERO_RS04425 0.87 +0.3 976,751 + HSERO_RS04425 0.88 -1.5 976,752 + HSERO_RS04425 0.88 +0.1 976,767 - -0.1 976,832 + +0.3 976,841 + -1.1 976,849 - +0.8 976,849 - -2.6 976,888 + +0.0 976,888 + +0.5 976,896 - -1.9 976,896 - -0.8 976,896 - +1.2 976,924 + -0.3 976,933 - +2.1 976,943 + -0.4 976,979 - HSERO_RS04430 0.12 +0.6 977,008 - -1.2 977,008 - HSERO_RS04430 0.14 -0.2 977,268 - HSERO_RS04430 0.35 -0.5 977,312 - HSERO_RS04430 0.39 +0.3 977,361 + HSERO_RS04430 0.43 -1.4 977,474 + HSERO_RS04430 0.52 +1.2 977,547 + HSERO_RS04430 0.58 -0.4 977,603 - HSERO_RS04430 0.63 -2.3 977,626 + HSERO_RS04430 0.64 -0.7
Or see this region's nucleotide sequence