Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04390 and HSERO_RS04395 are separated by 88 nucleotides HSERO_RS04395 and HSERO_RS04400 are separated by 79 nucleotides HSERO_RS04400 and HSERO_RS04405 overlap by 63 nucleotides HSERO_RS04405 and HSERO_RS04410 overlap by 10 nucleotides HSERO_RS04410 and HSERO_RS04415 overlap by 8 nucleotides HSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotides HSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides
HSERO_RS04390: HSERO_RS04390 - hypothetical protein, at 973,884 to 974,237
_RS04390
HSERO_RS04395: HSERO_RS04395 - hypothetical protein, at 974,326 to 974,532
_RS04395
HSERO_RS04400: HSERO_RS04400 - transcriptional regulator, at 974,612 to 974,806
_RS04400
HSERO_RS04405: HSERO_RS04405 - transcriptional regulator, at 974,744 to 974,872
_RS04405
HSERO_RS04410: HSERO_RS04410 - hypothetical protein, at 974,863 to 975,060
_RS04410
HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295
_RS04415
HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046
_RS04420
HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833
_RS04425
Position (kb) 975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.118 kb on + strand, within HSERO_RS04390 at 974.341 kb on - strand at 974.527 kb on + strand at 974.551 kb on + strand at 974.627 kb on + strand at 974.635 kb on - strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.708 kb on + strand, within HSERO_RS04400 at 974.716 kb on - strand, within HSERO_RS04400 at 974.736 kb on - strand, within HSERO_RS04400 at 974.747 kb on + strand at 974.755 kb on - strand at 974.813 kb on + strand, within HSERO_RS04405 at 974.821 kb on - strand, within HSERO_RS04405 at 974.861 kb on + strand at 974.908 kb on - strand, within HSERO_RS04410 at 974.940 kb on - strand, within HSERO_RS04410 at 975.014 kb on + strand, within HSERO_RS04410 at 975.014 kb on + strand at 975.022 kb on - strand, within HSERO_RS04410 at 975.022 kb on - strand, within HSERO_RS04410 at 975.035 kb on + strand, within HSERO_RS04410 at 975.035 kb on + strand, within HSERO_RS04410 at 975.045 kb on + strand at 975.125 kb on - strand, within HSERO_RS04415 at 975.146 kb on - strand, within HSERO_RS04415 at 975.153 kb on + strand at 975.153 kb on + strand, within HSERO_RS04415 at 975.153 kb on + strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.161 kb on - strand, within HSERO_RS04415 at 975.163 kb on + strand, within HSERO_RS04415 at 975.163 kb on + strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand at 975.171 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.183 kb on + strand, within HSERO_RS04415 at 975.301 kb on + strand at 975.310 kb on - strand at 975.310 kb on - strand at 975.335 kb on - strand at 975.352 kb on - strand at 975.396 kb on + strand at 975.396 kb on + strand at 975.404 kb on - strand at 975.404 kb on - strand at 976.066 kb on + strand at 976.082 kb on + strand at 976.089 kb on + strand at 976.089 kb on + strand at 976.089 kb on - strand at 976.091 kb on + strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.097 kb on - strand at 976.099 kb on - strand at 976.099 kb on - strand at 976.127 kb on + strand at 976.127 kb on + strand at 976.136 kb on - strand at 976.141 kb on + strand at 976.141 kb on - strand at 976.141 kb on - strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.149 kb on + strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.168 kb on - strand at 976.168 kb on - strand at 976.186 kb on + strand at 976.196 kb on + strand at 976.199 kb on - strand at 976.199 kb on - strand at 976.201 kb on - strand at 976.206 kb on + strand at 976.220 kb on + strand at 976.228 kb on - strand at 976.229 kb on - strand at 976.239 kb on + strand, within HSERO_RS04425 at 976.239 kb on + strand, within HSERO_RS04425 at 976.264 kb on - strand, within HSERO_RS04425 at 976.273 kb on + strand, within HSERO_RS04425 at 976.281 kb on - strand, within HSERO_RS04425 at 976.285 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 974,118 + HSERO_RS04390 0.66 -0.1 974,341 - -1.3 974,527 + -0.1 974,551 + +0.2 974,627 + +0.9 974,635 - HSERO_RS04400 0.12 +0.1 974,708 + HSERO_RS04400 0.49 +0.9 974,708 + HSERO_RS04400 0.49 +0.2 974,708 + HSERO_RS04400 0.49 -0.1 974,716 - HSERO_RS04400 0.53 -0.8 974,736 - HSERO_RS04400 0.64 -0.7 974,747 + +0.2 974,755 - +0.3 974,813 + HSERO_RS04405 0.53 +1.2 974,821 - HSERO_RS04405 0.60 -0.1 974,861 + +0.3 974,908 - HSERO_RS04410 0.23 -0.0 974,940 - HSERO_RS04410 0.39 -1.1 975,014 + HSERO_RS04410 0.76 -0.5 975,014 + -2.2 975,022 - HSERO_RS04410 0.80 -0.5 975,022 - HSERO_RS04410 0.80 -0.1 975,035 + HSERO_RS04410 0.87 -0.4 975,035 + HSERO_RS04410 0.87 -1.3 975,045 + +1.5 975,125 - HSERO_RS04415 0.30 +0.2 975,146 - HSERO_RS04415 0.38 -0.7 975,153 + -1.2 975,153 + HSERO_RS04415 0.41 +0.0 975,153 + HSERO_RS04415 0.41 -1.2 975,161 - HSERO_RS04415 0.44 -0.0 975,161 - HSERO_RS04415 0.44 +0.3 975,161 - HSERO_RS04415 0.44 +1.0 975,161 - HSERO_RS04415 0.44 -0.3 975,163 + HSERO_RS04415 0.45 -0.0 975,163 + HSERO_RS04415 0.45 -0.0 975,171 - HSERO_RS04415 0.49 +1.5 975,171 - HSERO_RS04415 0.49 -1.1 975,171 - -0.2 975,171 - HSERO_RS04415 0.49 +0.9 975,173 - HSERO_RS04415 0.49 +0.2 975,173 - HSERO_RS04415 0.49 -0.1 975,173 - HSERO_RS04415 0.49 +1.1 975,183 + HSERO_RS04415 0.53 +0.0 975,301 + +0.3 975,310 - +0.8 975,310 - -1.5 975,335 - -0.4 975,352 - +0.5 975,396 + +0.1 975,396 + -2.1 975,404 - +0.6 975,404 - -0.7 976,066 + +1.4 976,082 + +0.5 976,089 + +0.5 976,089 + +1.0 976,089 - -0.5 976,091 + -1.6 976,094 - -0.5 976,094 - -1.7 976,094 - -0.4 976,097 - -2.1 976,099 - +0.3 976,099 - +2.1 976,127 + -0.8 976,127 + -0.0 976,136 - -0.6 976,141 + -0.4 976,141 - +0.4 976,141 - -0.2 976,147 + -0.0 976,147 + -0.4 976,147 + +0.2 976,147 + +0.2 976,147 + -0.2 976,147 + -0.2 976,147 + -1.2 976,147 + -0.4 976,147 + -0.4 976,147 + -0.5 976,147 + +0.7 976,147 + +0.2 976,147 + -0.1 976,149 + -0.6 976,155 - -0.1 976,155 - +1.5 976,155 - +2.4 976,155 - -0.5 976,155 - +0.4 976,155 - -0.6 976,155 - +0.6 976,155 - +0.3 976,155 - +0.5 976,155 - +0.3 976,155 - +0.4 976,155 - -0.4 976,168 - -1.0 976,168 - -0.0 976,186 + +0.7 976,196 + -2.6 976,199 - +0.2 976,199 - -1.0 976,201 - +0.0 976,206 + -1.3 976,220 + -0.6 976,228 - +0.9 976,229 - +0.7 976,239 + HSERO_RS04425 0.11 +0.4 976,239 + HSERO_RS04425 0.11 +0.8 976,264 - HSERO_RS04425 0.14 -0.2 976,273 + HSERO_RS04425 0.16 -3.3 976,281 - HSERO_RS04425 0.17 +0.5 976,285 + HSERO_RS04425 0.18 -0.7 976,292 + HSERO_RS04425 0.19 +1.2 976,292 + HSERO_RS04425 0.19 -2.7 976,292 + HSERO_RS04425 0.19 +0.5
Or see this region's nucleotide sequence