Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00770 and HSERO_RS00775 are separated by 120 nucleotides HSERO_RS00775 and HSERO_RS00780 are separated by 55 nucleotides HSERO_RS00780 and HSERO_RS00785 are separated by 63 nucleotides
HSERO_RS00770: HSERO_RS00770 - cytochrome C biogenesis protein ResB, at 161,061 to 163,211
_RS00770
HSERO_RS00775: HSERO_RS00775 - cytochrome C biogenesis protein, at 163,332 to 164,486
_RS00775
HSERO_RS00780: HSERO_RS00780 - sugar transferase, at 164,542 to 165,189
_RS00780
HSERO_RS00785: HSERO_RS00785 - acetyltransferase, at 165,253 to 165,843
_RS00785
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 163.199 kb on + strand at 163.406 kb on + strand at 164.500 kb on + strand at 164.523 kb on - strand at 164.571 kb on + strand at 164.620 kb on + strand, within HSERO_RS00780 at 164.625 kb on + strand, within HSERO_RS00780 at 164.628 kb on - strand, within HSERO_RS00780 at 164.628 kb on - strand, within HSERO_RS00780 at 164.688 kb on + strand, within HSERO_RS00780 at 164.753 kb on - strand, within HSERO_RS00780 at 164.822 kb on - strand, within HSERO_RS00780 at 164.858 kb on + strand, within HSERO_RS00780 at 164.943 kb on + strand, within HSERO_RS00780 at 164.954 kb on + strand, within HSERO_RS00780 at 165.090 kb on + strand, within HSERO_RS00780 at 165.156 kb on - strand at 165.196 kb on + strand at 165.310 kb on - strand at 165.327 kb on + strand, within HSERO_RS00785 at 165.452 kb on + strand, within HSERO_RS00785 at 165.472 kb on + strand, within HSERO_RS00785 at 165.472 kb on + strand, within HSERO_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 163,199 + +0.6 163,406 + -0.3 164,500 + -0.2 164,523 - -1.1 164,571 + -2.6 164,620 + HSERO_RS00780 0.12 -0.1 164,625 + HSERO_RS00780 0.13 -0.7 164,628 - HSERO_RS00780 0.13 +0.9 164,628 - HSERO_RS00780 0.13 +0.3 164,688 + HSERO_RS00780 0.23 +0.2 164,753 - HSERO_RS00780 0.33 -0.5 164,822 - HSERO_RS00780 0.43 -1.3 164,858 + HSERO_RS00780 0.49 -0.2 164,943 + HSERO_RS00780 0.62 -2.9 164,954 + HSERO_RS00780 0.64 +0.1 165,090 + HSERO_RS00780 0.85 +0.2 165,156 - +0.7 165,196 + -0.1 165,310 - -0.7 165,327 + HSERO_RS00785 0.13 +0.2 165,452 + HSERO_RS00785 0.34 -0.3 165,472 + HSERO_RS00785 0.37 +0.3 165,472 + HSERO_RS00785 0.37 +0.6
Or see this region's nucleotide sequence