Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00235 and HSERO_RS00240 are separated by 187 nucleotides HSERO_RS00240 and HSERO_RS00245 are separated by 30 nucleotides
HSERO_RS00235: HSERO_RS00235 - MFS transporter, at 60,729 to 62,000
_RS00235
HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078
_RS00240
HSERO_RS00245: HSERO_RS00245 - hypothetical protein, at 63,109 to 63,564
_RS00245
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 61.236 kb on - strand, within HSERO_RS00235 at 61.591 kb on - strand, within HSERO_RS00235 at 61.640 kb on + strand, within HSERO_RS00235 at 61.648 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.817 kb on + strand, within HSERO_RS00235 at 61.833 kb on - strand, within HSERO_RS00235 at 62.028 kb on + strand at 62.053 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.182 kb on - strand at 62.182 kb on - strand at 62.300 kb on - strand, within HSERO_RS00240 at 62.364 kb on + strand, within HSERO_RS00240 at 62.407 kb on - strand, within HSERO_RS00240 at 62.562 kb on + strand, within HSERO_RS00240 at 62.746 kb on + strand, within HSERO_RS00240 at 62.871 kb on + strand, within HSERO_RS00240 at 62.907 kb on - strand, within HSERO_RS00240 at 63.054 kb on - strand at 63.231 kb on - strand, within HSERO_RS00245 at 63.300 kb on + strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.347 kb on - strand, within HSERO_RS00245 at 63.472 kb on + strand, within HSERO_RS00245 at 63.518 kb on + strand, within HSERO_RS00245 at 63.523 kb on + strand at 63.541 kb on + strand at 63.563 kb on - strand at 63.724 kb on + strand at 63.787 kb on + strand at 63.794 kb on + strand at 63.802 kb on - strand at 63.802 kb on - strand at 63.845 kb on - strand at 63.919 kb on - strand at 63.930 kb on - strand at 63.967 kb on + strand at 63.973 kb on + strand at 63.975 kb on - strand at 64.026 kb on + strand at 64.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 61,236 - HSERO_RS00235 0.40 -0.0 61,591 - HSERO_RS00235 0.68 +0.2 61,640 + HSERO_RS00235 0.72 +0.1 61,648 - HSERO_RS00235 0.72 +2.0 61,809 - HSERO_RS00235 0.85 -1.6 61,809 - HSERO_RS00235 0.85 +0.3 61,817 + HSERO_RS00235 0.86 -0.8 61,833 - HSERO_RS00235 0.87 -1.0 62,028 + -0.5 62,053 + -0.8 62,174 + +0.9 62,174 + +0.5 62,174 + -1.9 62,182 - -1.4 62,182 - +0.5 62,300 - HSERO_RS00240 0.13 -0.1 62,364 + HSERO_RS00240 0.20 +0.5 62,407 - HSERO_RS00240 0.25 +0.8 62,562 + HSERO_RS00240 0.42 +0.6 62,746 + HSERO_RS00240 0.63 +2.4 62,871 + HSERO_RS00240 0.77 +2.2 62,907 - HSERO_RS00240 0.81 -1.0 63,054 - -2.0 63,231 - HSERO_RS00245 0.27 +1.6 63,300 + HSERO_RS00245 0.42 -0.1 63,347 - HSERO_RS00245 0.52 -0.8 63,347 - HSERO_RS00245 0.52 -0.4 63,472 + HSERO_RS00245 0.80 +0.3 63,518 + HSERO_RS00245 0.90 -0.3 63,523 + +1.4 63,541 + -0.3 63,563 - +0.2 63,724 + -0.4 63,787 + +0.2 63,794 + -0.3 63,802 - -0.3 63,802 - +0.5 63,845 - +2.4 63,919 - -3.5 63,930 - -1.1 63,967 + -2.5 63,973 + -0.2 63,975 - -0.7 64,026 + -0.3 64,034 - +0.5
Or see this region's nucleotide sequence