Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00230

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00225 and HSERO_RS00230 are separated by 489 nucleotidesHSERO_RS00230 and HSERO_RS00235 are separated by 284 nucleotides HSERO_RS00225: HSERO_RS00225 - glutamine amidotransferase, at 58,885 to 59,634 _RS00225 HSERO_RS00230: HSERO_RS00230 - hypothetical protein, at 60,124 to 60,444 _RS00230 HSERO_RS00235: HSERO_RS00235 - MFS transporter, at 60,729 to 62,000 _RS00235 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1at 59.147 kb on + strand, within HSERO_RS00225at 59.155 kb on - strand, within HSERO_RS00225at 59.155 kb on - strand, within HSERO_RS00225at 59.187 kb on - strand, within HSERO_RS00225at 59.193 kb on + strand, within HSERO_RS00225at 59.297 kb on + strand, within HSERO_RS00225at 59.377 kb on + strand, within HSERO_RS00225at 59.385 kb on - strand, within HSERO_RS00225at 59.391 kb on - strand, within HSERO_RS00225at 59.935 kb on + strandat 60.241 kb on + strand, within HSERO_RS00230at 60.708 kb on + strandat 60.896 kb on - strand, within HSERO_RS00235at 60.954 kb on + strand, within HSERO_RS00235at 61.089 kb on + strand, within HSERO_RS00235at 61.128 kb on + strand, within HSERO_RS00235at 61.236 kb on - strand, within HSERO_RS00235

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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59,147 + HSERO_RS00225 0.35 -0.0
59,155 - HSERO_RS00225 0.36 +0.5
59,155 - HSERO_RS00225 0.36 -0.9
59,187 - HSERO_RS00225 0.40 -0.5
59,193 + HSERO_RS00225 0.41 -0.8
59,297 + HSERO_RS00225 0.55 -0.3
59,377 + HSERO_RS00225 0.66 -0.9
59,385 - HSERO_RS00225 0.67 -2.3
59,391 - HSERO_RS00225 0.67 -1.6
59,935 + -0.6
60,241 + HSERO_RS00230 0.36 -0.8
60,708 + -0.3
60,896 - HSERO_RS00235 0.13 +0.9
60,954 + HSERO_RS00235 0.18 -0.3
61,089 + HSERO_RS00235 0.28 -0.5
61,128 + HSERO_RS00235 0.31 -0.5
61,236 - HSERO_RS00235 0.40 -0.0

Or see this region's nucleotide sequence