Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00780 and PGA1_c00790 are separated by 58 nucleotides PGA1_c00790 and PGA1_c00800 are separated by 63 nucleotides PGA1_c00800 and PGA1_c00810 are separated by 40 nucleotides
PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545
_c00780
PGA1_c00790: PGA1_c00790 - hypothetical protein, at 78,604 to 79,071
_c00790
PGA1_c00800: PGA1_c00800 - hypothetical protein, at 79,135 to 79,524
_c00800
PGA1_c00810: PGA1_c00810 - putative lytic murein transglycosylase, at 79,565 to 80,737
_c00810
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.151 kb on + strand, within PGA1_c00780 at 78.276 kb on + strand at 78.284 kb on - strand at 78.309 kb on + strand at 78.506 kb on - strand at 78.541 kb on + strand at 78.568 kb on + strand at 78.637 kb on - strand at 78.642 kb on - strand at 78.653 kb on + strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.678 kb on + strand, within PGA1_c00790 at 78.740 kb on + strand, within PGA1_c00790 at 78.772 kb on + strand, within PGA1_c00790 at 78.803 kb on + strand, within PGA1_c00790 at 78.804 kb on + strand, within PGA1_c00790 at 78.811 kb on - strand, within PGA1_c00790 at 78.859 kb on - strand, within PGA1_c00790 at 78.935 kb on - strand, within PGA1_c00790 at 79.037 kb on - strand at 79.065 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.083 kb on - strand at 79.083 kb on - strand at 79.133 kb on + strand at 79.186 kb on + strand, within PGA1_c00800 at 79.209 kb on + strand, within PGA1_c00800 at 79.227 kb on - strand, within PGA1_c00800 at 79.244 kb on - strand, within PGA1_c00800 at 79.308 kb on + strand, within PGA1_c00800 at 79.366 kb on + strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.382 kb on - strand, within PGA1_c00800 at 79.428 kb on + strand, within PGA1_c00800 at 79.458 kb on + strand, within PGA1_c00800 at 79.518 kb on + strand at 79.526 kb on - strand at 79.539 kb on + strand at 79.561 kb on - strand at 79.580 kb on - strand at 79.580 kb on - strand at 79.580 kb on - strand at 79.587 kb on + strand at 79.659 kb on + strand at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.761 kb on + strand, within PGA1_c00810 at 79.813 kb on + strand, within PGA1_c00810 at 79.813 kb on + strand, within PGA1_c00810 at 79.821 kb on - strand, within PGA1_c00810 at 79.826 kb on + strand, within PGA1_c00810 at 79.898 kb on - strand, within PGA1_c00810 at 79.988 kb on + strand, within PGA1_c00810 at 80.104 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.257 kb on + strand, within PGA1_c00810 at 80.276 kb on - strand, within PGA1_c00810 at 80.422 kb on + strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 78,151 + PGA1_c00780 0.89 -0.1 78,276 + -0.6 78,284 - -0.4 78,309 + +2.3 78,506 - -0.4 78,541 + -2.0 78,568 + +0.6 78,637 - -0.6 78,642 - +0.3 78,653 + PGA1_c00790 0.10 +1.1 78,661 - PGA1_c00790 0.12 +0.5 78,661 - PGA1_c00790 0.12 +1.9 78,661 - PGA1_c00790 0.12 +1.6 78,678 + PGA1_c00790 0.16 -0.4 78,740 + PGA1_c00790 0.29 +1.1 78,772 + PGA1_c00790 0.36 -1.1 78,803 + PGA1_c00790 0.43 -0.4 78,804 + PGA1_c00790 0.43 +0.7 78,811 - PGA1_c00790 0.44 -0.1 78,859 - PGA1_c00790 0.54 -0.5 78,935 - PGA1_c00790 0.71 +0.1 79,037 - -0.6 79,065 + -0.3 79,075 + -0.4 79,075 + +0.0 79,075 + -1.1 79,083 - +0.3 79,083 - +0.5 79,133 + -0.5 79,186 + PGA1_c00800 0.13 -1.3 79,209 + PGA1_c00800 0.19 -0.7 79,227 - PGA1_c00800 0.24 -0.9 79,244 - PGA1_c00800 0.28 -0.4 79,308 + PGA1_c00800 0.44 -0.9 79,366 + PGA1_c00800 0.59 -0.6 79,374 - PGA1_c00800 0.61 +0.0 79,374 - PGA1_c00800 0.61 -1.6 79,382 - PGA1_c00800 0.63 -1.7 79,428 + PGA1_c00800 0.75 -0.9 79,458 + PGA1_c00800 0.83 -0.9 79,518 + +0.6 79,526 - -0.2 79,539 + +0.1 79,561 - +0.6 79,580 - -1.3 79,580 - -0.1 79,580 - -1.1 79,587 + +0.6 79,659 + -0.3 79,684 + PGA1_c00810 0.10 +0.5 79,684 + PGA1_c00810 0.10 +0.6 79,684 + PGA1_c00810 0.10 -0.4 79,684 + PGA1_c00810 0.10 -1.1 79,761 + PGA1_c00810 0.17 +0.6 79,813 + PGA1_c00810 0.21 -0.0 79,813 + PGA1_c00810 0.21 +0.4 79,821 - PGA1_c00810 0.22 -0.8 79,826 + PGA1_c00810 0.22 -0.9 79,898 - PGA1_c00810 0.28 -1.5 79,988 + PGA1_c00810 0.36 -1.6 80,104 - PGA1_c00810 0.46 -0.8 80,191 - PGA1_c00810 0.53 -0.4 80,191 - PGA1_c00810 0.53 -0.1 80,191 - PGA1_c00810 0.53 -1.4 80,257 + PGA1_c00810 0.59 -0.5 80,276 - PGA1_c00810 0.61 -0.6 80,422 + PGA1_c00810 0.73 -1.2 80,430 - PGA1_c00810 0.74 +0.8 80,430 - PGA1_c00810 0.74 -0.3 80,430 - PGA1_c00810 0.74 +0.8
Or see this region's nucleotide sequence