Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07890

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07880 and PGA1_c07890 are separated by 65 nucleotidesPGA1_c07890 and PGA1_c07900 are separated by 31 nucleotides PGA1_c07880: PGA1_c07880 - alpha-glucoside transport system permease protein AglG, at 816,795 to 817,943 _c07880 PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) (from data), at 818,009 to 819,667 _c07890 PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790 _c07900 Position (kb) 818 819 820Strain fitness (log2 ratio) -1 0 1 2at 817.082 kb on - strand, within PGA1_c07880at 817.121 kb on - strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.273 kb on - strand, within PGA1_c07880at 817.301 kb on + strand, within PGA1_c07880at 817.422 kb on + strand, within PGA1_c07880at 817.445 kb on - strand, within PGA1_c07880at 817.451 kb on + strand, within PGA1_c07880at 817.520 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.526 kb on - strand, within PGA1_c07880at 817.697 kb on - strand, within PGA1_c07880at 817.752 kb on + strand, within PGA1_c07880at 817.754 kb on - strand, within PGA1_c07880at 817.785 kb on + strand, within PGA1_c07880at 817.848 kb on + strandat 817.848 kb on + strandat 817.955 kb on + strandat 817.963 kb on - strandat 817.968 kb on - strandat 817.973 kb on - strandat 817.973 kb on - strandat 817.985 kb on - strandat 818.103 kb on + strandat 818.111 kb on - strandat 818.151 kb on + strandat 818.236 kb on - strand, within PGA1_c07890at 818.319 kb on + strand, within PGA1_c07890at 818.325 kb on - strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.366 kb on + strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.384 kb on + strand, within PGA1_c07890at 818.401 kb on - strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.433 kb on + strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.524 kb on + strand, within PGA1_c07890at 818.531 kb on - strand, within PGA1_c07890at 818.544 kb on - strand, within PGA1_c07890at 818.566 kb on - strand, within PGA1_c07890at 818.577 kb on - strand, within PGA1_c07890at 818.628 kb on + strand, within PGA1_c07890at 818.637 kb on + strand, within PGA1_c07890at 818.656 kb on - strand, within PGA1_c07890at 818.673 kb on + strand, within PGA1_c07890at 818.975 kb on - strand, within PGA1_c07890at 819.017 kb on + strand, within PGA1_c07890at 819.082 kb on - strand, within PGA1_c07890at 819.124 kb on + strand, within PGA1_c07890at 819.134 kb on + strand, within PGA1_c07890at 819.155 kb on + strand, within PGA1_c07890at 819.228 kb on + strand, within PGA1_c07890at 819.265 kb on - strand, within PGA1_c07890at 819.290 kb on - strand, within PGA1_c07890at 819.306 kb on + strand, within PGA1_c07890at 819.310 kb on + strand, within PGA1_c07890at 819.399 kb on + strand, within PGA1_c07890at 819.449 kb on - strand, within PGA1_c07890at 819.471 kb on - strand, within PGA1_c07890at 819.493 kb on - strand, within PGA1_c07890at 819.549 kb on + strandat 819.556 kb on + strandat 819.731 kb on + strandat 819.731 kb on + strandat 819.739 kb on - strandat 819.739 kb on - strandat 819.810 kb on + strand, within PGA1_c07900at 819.836 kb on + strand, within PGA1_c07900at 819.858 kb on + strand, within PGA1_c07900at 819.933 kb on + strand, within PGA1_c07900at 819.965 kb on + strand, within PGA1_c07900at 819.973 kb on - strand, within PGA1_c07900at 819.985 kb on + strand, within PGA1_c07900at 820.031 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.168 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.248 kb on + strand, within PGA1_c07900at 820.256 kb on - strand, within PGA1_c07900at 820.289 kb on - strand, within PGA1_c07900at 820.304 kb on + strand, within PGA1_c07900at 820.309 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.365 kb on - strand, within PGA1_c07900at 820.470 kb on - strand, within PGA1_c07900at 820.475 kb on + strand, within PGA1_c07900at 820.521 kb on + strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.574 kb on + strand, within PGA1_c07900at 820.612 kb on - strand, within PGA1_c07900at 820.620 kb on + strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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817,082 - PGA1_c07880 0.25 -0.8
817,121 - PGA1_c07880 0.28 -0.3
817,123 + PGA1_c07880 0.29 +1.4
817,123 + PGA1_c07880 0.29 +0.5
817,123 + PGA1_c07880 0.29 +0.1
817,131 - PGA1_c07880 0.29 +0.6
817,131 - PGA1_c07880 0.29 +0.8
817,213 + PGA1_c07880 0.36 +1.2
817,213 + PGA1_c07880 0.36 +0.1
817,213 + PGA1_c07880 0.36 -0.1
817,213 + PGA1_c07880 0.36 -0.3
817,273 - PGA1_c07880 0.42 +0.6
817,301 + PGA1_c07880 0.44 +0.6
817,422 + PGA1_c07880 0.55 +1.3
817,445 - PGA1_c07880 0.57 +0.8
817,451 + PGA1_c07880 0.57 +0.1
817,520 - PGA1_c07880 0.63 +1.2
817,525 - PGA1_c07880 0.64 -0.8
817,525 - PGA1_c07880 0.64 +1.7
817,526 - PGA1_c07880 0.64 +1.3
817,697 - PGA1_c07880 0.79 +2.0
817,752 + PGA1_c07880 0.83 +0.9
817,754 - PGA1_c07880 0.83 +0.8
817,785 + PGA1_c07880 0.86 +0.7
817,848 + +1.2
817,848 + +0.7
817,955 + +0.9
817,963 - +0.4
817,968 - +0.3
817,973 - -0.2
817,973 - +0.7
817,985 - +1.5
818,103 + -1.0
818,111 - +0.0
818,151 + -0.6
818,236 - PGA1_c07890 0.14 -0.1
818,319 + PGA1_c07890 0.19 +0.6
818,325 - PGA1_c07890 0.19 -0.4
818,361 + PGA1_c07890 0.21 +1.2
818,361 + PGA1_c07890 0.21 +0.7
818,361 + PGA1_c07890 0.21 +0.4
818,361 + PGA1_c07890 0.21 +1.5
818,361 + PGA1_c07890 0.21 -0.1
818,366 + PGA1_c07890 0.22 -0.1
818,369 - PGA1_c07890 0.22 -0.4
818,369 - PGA1_c07890 0.22 +0.9
818,369 - PGA1_c07890 0.22 -0.0
818,369 - PGA1_c07890 0.22 -1.2
818,369 - PGA1_c07890 0.22 +0.3
818,369 - PGA1_c07890 0.22 +1.3
818,369 - PGA1_c07890 0.22 +0.6
818,384 + PGA1_c07890 0.23 +0.3
818,401 - PGA1_c07890 0.24 +0.2
818,428 + PGA1_c07890 0.25 -0.0
818,428 + PGA1_c07890 0.25 +1.4
818,433 + PGA1_c07890 0.26 +0.6
818,436 - PGA1_c07890 0.26 +1.0
818,436 - PGA1_c07890 0.26 -0.4
818,436 - PGA1_c07890 0.26 +0.3
818,436 - PGA1_c07890 0.26 -0.0
818,524 + PGA1_c07890 0.31 -1.4
818,531 - PGA1_c07890 0.31 +1.2
818,544 - PGA1_c07890 0.32 +1.6
818,566 - PGA1_c07890 0.34 +0.7
818,577 - PGA1_c07890 0.34 -0.2
818,628 + PGA1_c07890 0.37 +1.0
818,637 + PGA1_c07890 0.38 -0.3
818,656 - PGA1_c07890 0.39 +0.3
818,673 + PGA1_c07890 0.40 +0.4
818,975 - PGA1_c07890 0.58 +0.1
819,017 + PGA1_c07890 0.61 -0.7
819,082 - PGA1_c07890 0.65 +0.4
819,124 + PGA1_c07890 0.67 +0.8
819,134 + PGA1_c07890 0.68 -0.0
819,155 + PGA1_c07890 0.69 +0.7
819,228 + PGA1_c07890 0.73 +0.7
819,265 - PGA1_c07890 0.76 +1.0
819,290 - PGA1_c07890 0.77 -0.2
819,306 + PGA1_c07890 0.78 +1.1
819,310 + PGA1_c07890 0.78 -1.1
819,399 + PGA1_c07890 0.84 -0.2
819,449 - PGA1_c07890 0.87 +0.6
819,471 - PGA1_c07890 0.88 -0.0
819,493 - PGA1_c07890 0.89 +0.7
819,549 + -0.8
819,556 + -0.8
819,731 + +0.8
819,731 + +1.5
819,739 - +1.2
819,739 - +1.2
819,810 + PGA1_c07900 0.10 -0.1
819,836 + PGA1_c07900 0.13 -0.1
819,858 + PGA1_c07900 0.15 +0.9
819,933 + PGA1_c07900 0.21 +1.6
819,965 + PGA1_c07900 0.24 +0.4
819,973 - PGA1_c07900 0.25 +0.9
819,985 + PGA1_c07900 0.26 +0.9
820,031 - PGA1_c07900 0.30 +0.2
820,099 - PGA1_c07900 0.37 +0.9
820,099 - PGA1_c07900 0.37 +1.2
820,138 + PGA1_c07900 0.40 +0.9
820,138 + PGA1_c07900 0.40 -0.1
820,168 - PGA1_c07900 0.43 +1.1
820,208 - PGA1_c07900 0.47 +1.0
820,208 - PGA1_c07900 0.47 +0.8
820,248 + PGA1_c07900 0.50 +0.3
820,256 - PGA1_c07900 0.51 +0.9
820,289 - PGA1_c07900 0.54 +1.1
820,304 + PGA1_c07900 0.55 +0.1
820,309 + PGA1_c07900 0.56 +0.8
820,346 + PGA1_c07900 0.59 +0.9
820,346 + PGA1_c07900 0.59 +0.2
820,346 + PGA1_c07900 0.59 +0.3
820,346 + PGA1_c07900 0.59 +0.7
820,354 - PGA1_c07900 0.60 -0.1
820,354 - PGA1_c07900 0.60 +0.3
820,354 - PGA1_c07900 0.60 +1.0
820,365 - PGA1_c07900 0.61 +1.1
820,470 - PGA1_c07900 0.71 +1.0
820,475 + PGA1_c07900 0.71 +0.6
820,521 + PGA1_c07900 0.75 +0.9
820,529 - PGA1_c07900 0.76 +0.1
820,529 - PGA1_c07900 0.76 +0.7
820,574 + PGA1_c07900 0.80 -0.8
820,612 - PGA1_c07900 0.84 +1.3
820,620 + PGA1_c07900 0.84 -0.3
820,648 - PGA1_c07900 0.87 -0.2
820,648 - PGA1_c07900 0.87 +1.4
820,648 - PGA1_c07900 0.87 +1.7

Or see this region's nucleotide sequence