Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06820

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06800 and PGA1_c06810 overlap by 1 nucleotidesPGA1_c06810 and PGA1_c06820 overlap by 4 nucleotidesPGA1_c06820 and PGA1_c06830 are separated by 18 nucleotides PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052 _c06800 PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032 _c06810 PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994 _c06820 PGA1_c06830: PGA1_c06830 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 703,013 to 703,909 _c06830 Position (kb) 702 703Strain fitness (log2 ratio) -2 -1 0 1 2at 701.062 kb on - strandat 701.122 kb on - strandat 701.122 kb on - strandat 701.132 kb on + strandat 701.190 kb on + strand, within PGA1_c06810at 701.193 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.367 kb on - strand, within PGA1_c06810at 701.413 kb on + strand, within PGA1_c06810at 701.423 kb on + strand, within PGA1_c06810at 701.428 kb on + strand, within PGA1_c06810at 701.431 kb on - strand, within PGA1_c06810at 701.436 kb on - strand, within PGA1_c06810at 701.437 kb on - strand, within PGA1_c06810at 701.438 kb on - strand, within PGA1_c06810at 701.484 kb on + strand, within PGA1_c06810at 701.532 kb on + strand, within PGA1_c06810at 701.558 kb on - strand, within PGA1_c06810at 701.592 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.657 kb on - strand, within PGA1_c06810at 701.668 kb on + strand, within PGA1_c06810at 701.676 kb on - strand, within PGA1_c06810at 701.689 kb on + strand, within PGA1_c06810at 701.696 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.769 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.806 kb on - strand, within PGA1_c06810at 701.821 kb on + strand, within PGA1_c06810at 702.053 kb on + strandat 702.056 kb on - strandat 702.077 kb on + strandat 702.148 kb on - strand, within PGA1_c06820at 702.160 kb on + strand, within PGA1_c06820at 702.168 kb on + strand, within PGA1_c06820at 702.195 kb on + strand, within PGA1_c06820at 702.203 kb on - strand, within PGA1_c06820at 702.283 kb on - strand, within PGA1_c06820at 702.297 kb on + strand, within PGA1_c06820at 702.403 kb on - strand, within PGA1_c06820at 702.412 kb on + strand, within PGA1_c06820at 702.520 kb on + strand, within PGA1_c06820at 702.541 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.612 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.650 kb on - strand, within PGA1_c06820at 702.669 kb on + strand, within PGA1_c06820at 702.682 kb on - strand, within PGA1_c06820at 702.713 kb on - strand, within PGA1_c06820at 702.760 kb on + strand, within PGA1_c06820at 702.778 kb on - strand, within PGA1_c06820at 702.780 kb on + strand, within PGA1_c06820at 702.828 kb on + strand, within PGA1_c06820at 702.836 kb on - strand, within PGA1_c06820at 702.840 kb on + strand, within PGA1_c06820at 702.871 kb on - strand, within PGA1_c06820at 702.923 kb on - strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.934 kb on + strandat 702.935 kb on - strandat 702.997 kb on - strandat 703.094 kb on + strandat 703.102 kb on + strandat 703.174 kb on + strand, within PGA1_c06830at 703.185 kb on + strand, within PGA1_c06830at 703.192 kb on + strand, within PGA1_c06830at 703.193 kb on - strand, within PGA1_c06830at 703.262 kb on + strand, within PGA1_c06830at 703.305 kb on + strand, within PGA1_c06830at 703.308 kb on + strand, within PGA1_c06830at 703.313 kb on + strand, within PGA1_c06830at 703.313 kb on + strand, within PGA1_c06830at 703.313 kb on + strand, within PGA1_c06830at 703.313 kb on + strand, within PGA1_c06830at 703.313 kb on - strand, within PGA1_c06830at 703.321 kb on - strand, within PGA1_c06830at 703.321 kb on - strand, within PGA1_c06830at 703.335 kb on - strand, within PGA1_c06830at 703.362 kb on + strand, within PGA1_c06830at 703.411 kb on - strand, within PGA1_c06830at 703.466 kb on + strand, within PGA1_c06830at 703.513 kb on + strand, within PGA1_c06830at 703.540 kb on + strand, within PGA1_c06830at 703.548 kb on - strand, within PGA1_c06830at 703.548 kb on - strand, within PGA1_c06830at 703.568 kb on + strand, within PGA1_c06830at 703.621 kb on - strand, within PGA1_c06830at 703.637 kb on + strand, within PGA1_c06830at 703.756 kb on + strand, within PGA1_c06830at 703.756 kb on + strand, within PGA1_c06830at 703.763 kb on + strand, within PGA1_c06830at 703.781 kb on + strand, within PGA1_c06830at 703.792 kb on + strand, within PGA1_c06830at 703.818 kb on - strand, within PGA1_c06830at 703.891 kb on + strandat 703.891 kb on + strandat 703.892 kb on - strandat 703.899 kb on - strandat 703.908 kb on + strandat 703.953 kb on - strandat 703.962 kb on + strandat 703.970 kb on - strandat 703.985 kb on - strandat 703.992 kb on + strandat 703.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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701,062 - -0.2
701,122 - -0.5
701,122 - +0.3
701,132 + +1.6
701,190 + PGA1_c06810 0.14 +0.6
701,193 - PGA1_c06810 0.14 -0.5
701,203 - PGA1_c06810 0.15 +0.1
701,203 - PGA1_c06810 0.15 -0.0
701,367 - PGA1_c06810 0.32 +0.5
701,413 + PGA1_c06810 0.37 +0.1
701,423 + PGA1_c06810 0.38 +0.4
701,428 + PGA1_c06810 0.38 +0.1
701,431 - PGA1_c06810 0.39 -2.4
701,436 - PGA1_c06810 0.39 +0.0
701,437 - PGA1_c06810 0.39 +2.3
701,438 - PGA1_c06810 0.39 +0.9
701,484 + PGA1_c06810 0.44 -1.9
701,532 + PGA1_c06810 0.49 -0.7
701,558 - PGA1_c06810 0.52 -1.0
701,592 - PGA1_c06810 0.55 -0.3
701,602 - PGA1_c06810 0.56 +1.9
701,602 - PGA1_c06810 0.56 -0.3
701,602 - PGA1_c06810 0.56 +0.8
701,650 - PGA1_c06810 0.61 -1.3
701,650 - PGA1_c06810 0.61 +1.4
701,657 - PGA1_c06810 0.62 +0.2
701,668 + PGA1_c06810 0.63 -0.4
701,676 - PGA1_c06810 0.64 +0.2
701,689 + PGA1_c06810 0.65 -0.5
701,696 - PGA1_c06810 0.66 +0.1
701,697 - PGA1_c06810 0.66 +0.2
701,697 - PGA1_c06810 0.66 -0.4
701,738 - PGA1_c06810 0.70 +0.1
701,738 - PGA1_c06810 0.70 -0.0
701,769 + PGA1_c06810 0.73 -0.1
701,798 + PGA1_c06810 0.76 +0.2
701,798 + PGA1_c06810 0.76 -0.5
701,806 - PGA1_c06810 0.77 +0.1
701,821 + PGA1_c06810 0.78 +0.3
702,053 + -0.6
702,056 - -0.4
702,077 + -0.2
702,148 - PGA1_c06820 0.12 +0.3
702,160 + PGA1_c06820 0.14 +1.5
702,168 + PGA1_c06820 0.14 +0.6
702,195 + PGA1_c06820 0.17 -0.9
702,203 - PGA1_c06820 0.18 +0.9
702,283 - PGA1_c06820 0.26 +2.0
702,297 + PGA1_c06820 0.28 +1.0
702,403 - PGA1_c06820 0.39 -1.7
702,412 + PGA1_c06820 0.40 -0.2
702,520 + PGA1_c06820 0.51 +0.5
702,541 + PGA1_c06820 0.53 +0.4
702,611 + PGA1_c06820 0.60 -0.1
702,611 + PGA1_c06820 0.60 -0.2
702,612 - PGA1_c06820 0.60 -0.5
702,619 - PGA1_c06820 0.61 +0.7
702,619 - PGA1_c06820 0.61 -0.8
702,650 - PGA1_c06820 0.64 +1.4
702,669 + PGA1_c06820 0.66 +0.5
702,682 - PGA1_c06820 0.68 +2.3
702,713 - PGA1_c06820 0.71 -1.3
702,760 + PGA1_c06820 0.76 +0.5
702,778 - PGA1_c06820 0.78 +0.2
702,780 + PGA1_c06820 0.78 +0.1
702,828 + PGA1_c06820 0.83 -0.6
702,836 - PGA1_c06820 0.84 -0.2
702,840 + PGA1_c06820 0.84 -0.4
702,871 - PGA1_c06820 0.87 +0.7
702,923 - -0.1
702,925 + -0.5
702,925 + -1.2
702,925 + +0.9
702,927 + -0.2
702,927 + -0.6
702,927 + -0.3
702,933 - +1.2
702,933 - +0.7
702,933 - -0.2
702,934 + +0.4
702,935 - +0.8
702,997 - +0.1
703,094 + +0.1
703,102 + -0.2
703,174 + PGA1_c06830 0.18 +1.5
703,185 + PGA1_c06830 0.19 -0.1
703,192 + PGA1_c06830 0.20 -0.6
703,193 - PGA1_c06830 0.20 +0.4
703,262 + PGA1_c06830 0.28 +0.8
703,305 + PGA1_c06830 0.33 +0.9
703,308 + PGA1_c06830 0.33 +0.9
703,313 + PGA1_c06830 0.33 +0.2
703,313 + PGA1_c06830 0.33 +0.3
703,313 + PGA1_c06830 0.33 -0.4
703,313 + PGA1_c06830 0.33 +0.5
703,313 - PGA1_c06830 0.33 -1.4
703,321 - PGA1_c06830 0.34 -0.4
703,321 - PGA1_c06830 0.34 -0.1
703,335 - PGA1_c06830 0.36 +0.4
703,362 + PGA1_c06830 0.39 -0.5
703,411 - PGA1_c06830 0.44 +0.3
703,466 + PGA1_c06830 0.51 +0.5
703,513 + PGA1_c06830 0.56 +0.2
703,540 + PGA1_c06830 0.59 +0.3
703,548 - PGA1_c06830 0.60 +1.0
703,548 - PGA1_c06830 0.60 -0.3
703,568 + PGA1_c06830 0.62 -0.7
703,621 - PGA1_c06830 0.68 -0.2
703,637 + PGA1_c06830 0.70 +0.0
703,756 + PGA1_c06830 0.83 +0.4
703,756 + PGA1_c06830 0.83 +1.2
703,763 + PGA1_c06830 0.84 -0.1
703,781 + PGA1_c06830 0.86 -1.0
703,792 + PGA1_c06830 0.87 +0.1
703,818 - PGA1_c06830 0.90 +0.1
703,891 + -1.8
703,891 + -0.1
703,892 - +0.2
703,899 - +1.3
703,908 + -0.3
703,953 - +0.6
703,962 + -0.1
703,970 - +0.1
703,985 - -0.4
703,992 + +0.0
703,992 + -1.0

Or see this region's nucleotide sequence