Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04070

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04050 and PGA1_c04060 are separated by 122 nucleotidesPGA1_c04060 and PGA1_c04070 overlap by 1 nucleotidesPGA1_c04070 and PGA1_c04080 are separated by 73 nucleotides PGA1_c04050: PGA1_c04050 - phenylacetic acid degradation protein PaaD, at 390,853 to 391,326 _c04050 PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222 _c04060 PGA1_c04070: PGA1_c04070 - phenylacetic acid degradation protein PaaB, at 392,222 to 392,506 _c04070 PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557 _c04080 Position (kb) 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 391.225 kb on + strand, within PGA1_c04050at 391.261 kb on + strand, within PGA1_c04050at 391.280 kb on - strandat 391.379 kb on - strandat 391.380 kb on - strandat 391.380 kb on - strandat 391.380 kb on - strandat 391.440 kb on + strandat 391.493 kb on + strandat 391.494 kb on + strandat 391.580 kb on - strand, within PGA1_c04060at 391.592 kb on + strand, within PGA1_c04060at 391.642 kb on + strand, within PGA1_c04060at 391.692 kb on + strand, within PGA1_c04060at 391.719 kb on + strand, within PGA1_c04060at 391.767 kb on - strand, within PGA1_c04060at 391.808 kb on - strand, within PGA1_c04060at 391.858 kb on - strand, within PGA1_c04060at 391.866 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.073 kb on - strand, within PGA1_c04060at 392.073 kb on - strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.121 kb on + strand, within PGA1_c04060at 392.151 kb on + strandat 392.178 kb on - strandat 392.217 kb on + strandat 392.217 kb on + strandat 392.268 kb on + strand, within PGA1_c04070at 392.275 kb on + strand, within PGA1_c04070at 392.276 kb on - strand, within PGA1_c04070at 392.282 kb on - strand, within PGA1_c04070at 392.283 kb on - strand, within PGA1_c04070at 392.329 kb on - strand, within PGA1_c04070at 392.378 kb on + strand, within PGA1_c04070at 392.386 kb on + strand, within PGA1_c04070at 392.433 kb on + strand, within PGA1_c04070at 392.439 kb on + strand, within PGA1_c04070at 392.441 kb on - strand, within PGA1_c04070at 392.457 kb on - strand, within PGA1_c04070at 392.457 kb on - strand, within PGA1_c04070at 392.522 kb on + strandat 392.530 kb on - strandat 392.537 kb on + strandat 392.577 kb on + strandat 392.577 kb on + strandat 392.580 kb on - strandat 392.656 kb on + strandat 392.663 kb on - strandat 392.664 kb on - strandat 392.675 kb on + strandat 392.677 kb on + strandat 392.685 kb on - strand, within PGA1_c04080at 392.701 kb on + strand, within PGA1_c04080at 392.715 kb on - strand, within PGA1_c04080at 392.804 kb on + strand, within PGA1_c04080at 392.810 kb on + strand, within PGA1_c04080at 392.852 kb on - strand, within PGA1_c04080at 392.874 kb on - strand, within PGA1_c04080at 392.902 kb on + strand, within PGA1_c04080at 392.924 kb on - strand, within PGA1_c04080at 393.008 kb on - strand, within PGA1_c04080at 393.025 kb on + strand, within PGA1_c04080at 393.096 kb on - strand, within PGA1_c04080at 393.136 kb on + strand, within PGA1_c04080at 393.169 kb on + strand, within PGA1_c04080at 393.262 kb on - strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.279 kb on - strand, within PGA1_c04080at 393.281 kb on + strand, within PGA1_c04080at 393.282 kb on + strand, within PGA1_c04080at 393.289 kb on - strand, within PGA1_c04080at 393.298 kb on + strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.366 kb on + strand, within PGA1_c04080at 393.375 kb on - strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.468 kb on + strandat 393.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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391,225 + PGA1_c04050 0.78 -0.1
391,261 + PGA1_c04050 0.86 +0.2
391,280 - -0.2
391,379 - +0.2
391,380 - +0.7
391,380 - +1.8
391,380 - +1.5
391,440 + +0.2
391,493 + -0.3
391,494 + +0.4
391,580 - PGA1_c04060 0.17 -0.1
391,592 + PGA1_c04060 0.18 -0.3
391,642 + PGA1_c04060 0.25 -1.4
391,692 + PGA1_c04060 0.31 -0.6
391,719 + PGA1_c04060 0.35 +0.9
391,767 - PGA1_c04060 0.41 +0.8
391,808 - PGA1_c04060 0.46 +1.0
391,858 - PGA1_c04060 0.53 +0.4
391,866 - PGA1_c04060 0.54 +0.7
392,028 - PGA1_c04060 0.75 -0.4
392,028 - PGA1_c04060 0.75 -0.6
392,028 - PGA1_c04060 0.75 +0.5
392,073 - PGA1_c04060 0.81 +0.8
392,073 - PGA1_c04060 0.81 +0.5
392,080 + PGA1_c04060 0.82 +1.8
392,080 + PGA1_c04060 0.82 +0.6
392,080 + PGA1_c04060 0.82 +0.8
392,080 + PGA1_c04060 0.82 -0.5
392,080 + PGA1_c04060 0.82 +0.4
392,080 + PGA1_c04060 0.82 +0.6
392,088 - PGA1_c04060 0.83 +0.1
392,088 - PGA1_c04060 0.83 +0.2
392,088 - PGA1_c04060 0.83 +0.1
392,088 - PGA1_c04060 0.83 +0.3
392,088 - PGA1_c04060 0.83 +0.8
392,121 + PGA1_c04060 0.87 -0.1
392,151 + +1.0
392,178 - -2.6
392,217 + +0.1
392,217 + -0.0
392,268 + PGA1_c04070 0.16 +0.2
392,275 + PGA1_c04070 0.19 +0.0
392,276 - PGA1_c04070 0.19 +0.4
392,282 - PGA1_c04070 0.21 -0.4
392,283 - PGA1_c04070 0.21 +0.7
392,329 - PGA1_c04070 0.38 +0.9
392,378 + PGA1_c04070 0.55 +1.1
392,386 + PGA1_c04070 0.58 -0.2
392,433 + PGA1_c04070 0.74 +0.5
392,439 + PGA1_c04070 0.76 +0.1
392,441 - PGA1_c04070 0.77 -0.3
392,457 - PGA1_c04070 0.82 +0.8
392,457 - PGA1_c04070 0.82 +0.8
392,522 + -0.2
392,530 - +0.0
392,537 + +0.7
392,577 + +0.4
392,577 + +0.4
392,580 - +1.0
392,656 + +0.3
392,663 - +0.5
392,664 - +0.1
392,675 + -0.8
392,677 + +0.9
392,685 - PGA1_c04080 0.11 +0.5
392,701 + PGA1_c04080 0.12 +0.9
392,715 - PGA1_c04080 0.14 +0.1
392,804 + PGA1_c04080 0.23 -0.1
392,810 + PGA1_c04080 0.24 +1.2
392,852 - PGA1_c04080 0.28 -0.3
392,874 - PGA1_c04080 0.30 +2.1
392,902 + PGA1_c04080 0.33 +0.5
392,924 - PGA1_c04080 0.35 +0.2
393,008 - PGA1_c04080 0.44 -1.0
393,025 + PGA1_c04080 0.46 -0.4
393,096 - PGA1_c04080 0.53 +0.2
393,136 + PGA1_c04080 0.57 -0.4
393,169 + PGA1_c04080 0.60 -0.0
393,262 - PGA1_c04080 0.70 +0.3
393,271 + PGA1_c04080 0.71 +1.4
393,271 + PGA1_c04080 0.71 -0.1
393,271 + PGA1_c04080 0.71 +0.1
393,271 + PGA1_c04080 0.71 +0.5
393,279 - PGA1_c04080 0.71 +1.1
393,281 + PGA1_c04080 0.72 +0.7
393,282 + PGA1_c04080 0.72 +1.2
393,289 - PGA1_c04080 0.72 +0.1
393,298 + PGA1_c04080 0.73 -0.2
393,306 - PGA1_c04080 0.74 -0.2
393,306 - PGA1_c04080 0.74 +0.6
393,366 + PGA1_c04080 0.80 +0.0
393,375 - PGA1_c04080 0.81 +0.3
393,420 + PGA1_c04080 0.86 +0.4
393,420 + PGA1_c04080 0.86 +0.7
393,468 + +2.3
393,476 - -0.0

Or see this region's nucleotide sequence