Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01990 and PGA1_262p02000 are separated by 85 nucleotides PGA1_262p02000 and PGA1_262p02010 are separated by 269 nucleotides PGA1_262p02010 and PGA1_262p02020 are separated by 309 nucleotides
PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607
_262p01990
PGA1_262p02000: PGA1_262p02000 - putative transcriptional regulator, LysR type, at 218,693 to 219,550
_262p02000
PGA1_262p02010: PGA1_262p02010 - Uncharacterized conserved protein, at 219,820 to 220,068
_262p02010
PGA1_262p02020: PGA1_262p02020 - putative integrase, at 220,378 to 221,682
_262p02020
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.775 kb on - strand, within PGA1_262p01990 at 217.793 kb on - strand, within PGA1_262p01990 at 217.796 kb on - strand, within PGA1_262p01990 at 217.809 kb on - strand, within PGA1_262p01990 at 217.809 kb on - strand, within PGA1_262p01990 at 217.846 kb on + strand, within PGA1_262p01990 at 217.854 kb on - strand, within PGA1_262p01990 at 217.854 kb on - strand, within PGA1_262p01990 at 217.883 kb on + strand, within PGA1_262p01990 at 217.883 kb on + strand, within PGA1_262p01990 at 217.934 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 218.144 kb on - strand, within PGA1_262p01990 at 218.426 kb on + strand, within PGA1_262p01990 at 218.505 kb on + strand at 218.513 kb on - strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.539 kb on + strand at 218.540 kb on + strand at 218.540 kb on + strand at 218.546 kb on - strand at 218.546 kb on - strand at 218.603 kb on + strand at 218.709 kb on - strand at 218.716 kb on + strand at 218.724 kb on - strand at 218.763 kb on + strand at 218.860 kb on - strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.916 kb on - strand, within PGA1_262p02000 at 218.928 kb on + strand, within PGA1_262p02000 at 218.929 kb on - strand, within PGA1_262p02000 at 218.951 kb on - strand, within PGA1_262p02000 at 219.070 kb on - strand, within PGA1_262p02000 at 219.074 kb on + strand, within PGA1_262p02000 at 219.118 kb on + strand, within PGA1_262p02000 at 219.402 kb on + strand, within PGA1_262p02000 at 219.416 kb on + strand, within PGA1_262p02000 at 219.480 kb on + strand at 219.480 kb on + strand at 219.480 kb on + strand at 219.488 kb on - strand at 219.488 kb on - strand at 219.585 kb on - strand at 219.585 kb on - strand at 219.595 kb on + strand at 219.626 kb on + strand at 219.632 kb on - strand at 219.640 kb on + strand at 219.667 kb on + strand at 219.667 kb on + strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.698 kb on - strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.782 kb on + strand at 219.788 kb on - strand at 219.788 kb on - strand at 219.810 kb on + strand at 219.845 kb on - strand, within PGA1_262p02010 at 219.896 kb on - strand, within PGA1_262p02010 at 219.961 kb on - strand, within PGA1_262p02010 at 220.010 kb on + strand, within PGA1_262p02010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 217,775 - PGA1_262p01990 0.19 -1.0 217,793 - PGA1_262p01990 0.20 -1.2 217,796 - PGA1_262p01990 0.21 -1.0 217,809 - PGA1_262p01990 0.22 -0.4 217,809 - PGA1_262p01990 0.22 -0.7 217,846 + PGA1_262p01990 0.26 +0.4 217,854 - PGA1_262p01990 0.26 +0.3 217,854 - PGA1_262p01990 0.26 +0.2 217,883 + PGA1_262p01990 0.29 +1.1 217,883 + PGA1_262p01990 0.29 -0.8 217,934 - PGA1_262p01990 0.34 +0.2 217,944 - PGA1_262p01990 0.35 +0.5 217,944 - PGA1_262p01990 0.35 +0.4 217,944 - PGA1_262p01990 0.35 -0.4 218,144 - PGA1_262p01990 0.55 +0.8 218,426 + PGA1_262p01990 0.82 -1.8 218,505 + -0.1 218,513 - -0.1 218,538 + +0.4 218,538 + +0.3 218,538 + -0.0 218,538 + -1.0 218,539 + +0.4 218,540 + +0.9 218,540 + -1.4 218,546 - -0.2 218,546 - +0.4 218,603 + +0.3 218,709 - +0.9 218,716 + +0.2 218,724 - -0.2 218,763 + +0.1 218,860 - PGA1_262p02000 0.19 -0.3 218,908 + PGA1_262p02000 0.25 +0.6 218,908 + PGA1_262p02000 0.25 +0.7 218,916 - PGA1_262p02000 0.26 +0.9 218,928 + PGA1_262p02000 0.27 +0.3 218,929 - PGA1_262p02000 0.28 +0.2 218,951 - PGA1_262p02000 0.30 -1.0 219,070 - PGA1_262p02000 0.44 -0.3 219,074 + PGA1_262p02000 0.44 +0.8 219,118 + PGA1_262p02000 0.50 +0.6 219,402 + PGA1_262p02000 0.83 +0.8 219,416 + PGA1_262p02000 0.84 -1.7 219,480 + +0.4 219,480 + +1.0 219,480 + +0.4 219,488 - -0.0 219,488 - +0.7 219,585 - -0.3 219,585 - -1.3 219,595 + -0.2 219,626 + +0.7 219,632 - +0.6 219,640 + -0.3 219,667 + +0.3 219,667 + +1.0 219,675 - -0.0 219,675 - +1.0 219,675 - +0.7 219,698 - -1.1 219,780 + +0.1 219,780 + +1.4 219,780 + -0.4 219,780 + -0.8 219,782 + +0.6 219,788 - -0.0 219,788 - +0.2 219,810 + +0.1 219,845 - PGA1_262p02010 0.10 -0.2 219,896 - PGA1_262p02010 0.31 -1.2 219,961 - PGA1_262p02010 0.57 +0.4 220,010 + PGA1_262p02010 0.76 +0.7
Or see this region's nucleotide sequence