Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01200 and PGA1_262p01210 are separated by 4 nucleotides PGA1_262p01210 and PGA1_262p01220 are separated by 3 nucleotides
PGA1_262p01200: PGA1_262p01200 - putative protein NorD, at 131,338 to 133,275
_262p01200
PGA1_262p01210: PGA1_262p01210 - putative protein NorQ, at 133,280 to 134,074
_262p01210
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.450 kb on - strand, within PGA1_262p01200 at 132.824 kb on + strand, within PGA1_262p01200 at 132.879 kb on + strand, within PGA1_262p01200 at 132.970 kb on + strand, within PGA1_262p01200 at 133.046 kb on - strand, within PGA1_262p01200 at 133.290 kb on - strand at 133.407 kb on + strand, within PGA1_262p01210 at 133.438 kb on + strand, within PGA1_262p01210 at 133.507 kb on + strand, within PGA1_262p01210 at 133.607 kb on - strand, within PGA1_262p01210 at 133.618 kb on - strand, within PGA1_262p01210 at 133.796 kb on - strand, within PGA1_262p01210 at 133.821 kb on + strand, within PGA1_262p01210 at 133.982 kb on + strand, within PGA1_262p01210 at 133.988 kb on + strand, within PGA1_262p01210 at 134.107 kb on - strand at 134.108 kb on - strand at 134.239 kb on - strand, within PGA1_262p01220 at 134.374 kb on - strand, within PGA1_262p01220 at 134.433 kb on - strand, within PGA1_262p01220 at 134.479 kb on - strand, within PGA1_262p01220 at 134.566 kb on - strand, within PGA1_262p01220 at 134.657 kb on - strand, within PGA1_262p01220 at 134.813 kb on - strand, within PGA1_262p01220 at 134.879 kb on + strand, within PGA1_262p01220 at 134.951 kb on - strand, within PGA1_262p01220 at 134.971 kb on - strand, within PGA1_262p01220 at 135.018 kb on + strand, within PGA1_262p01220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 132,450 - PGA1_262p01200 0.57 +0.3 132,824 + PGA1_262p01200 0.77 +0.1 132,879 + PGA1_262p01200 0.80 +0.5 132,970 + PGA1_262p01200 0.84 +0.3 133,046 - PGA1_262p01200 0.88 +0.2 133,290 - +0.8 133,407 + PGA1_262p01210 0.16 +0.7 133,438 + PGA1_262p01210 0.20 +0.1 133,507 + PGA1_262p01210 0.29 -0.2 133,607 - PGA1_262p01210 0.41 -0.1 133,618 - PGA1_262p01210 0.43 +0.2 133,796 - PGA1_262p01210 0.65 -0.0 133,821 + PGA1_262p01210 0.68 +0.6 133,982 + PGA1_262p01210 0.88 -1.0 133,988 + PGA1_262p01210 0.89 -1.9 134,107 - +0.1 134,108 - -0.0 134,239 - PGA1_262p01220 0.12 +0.1 134,374 - PGA1_262p01220 0.22 -0.3 134,433 - PGA1_262p01220 0.26 +0.6 134,479 - PGA1_262p01220 0.30 +1.9 134,566 - PGA1_262p01220 0.36 -0.3 134,657 - PGA1_262p01220 0.43 -0.4 134,813 - PGA1_262p01220 0.54 -0.6 134,879 + PGA1_262p01220 0.59 +0.6 134,951 - PGA1_262p01220 0.64 +0.6 134,971 - PGA1_262p01220 0.66 -0.1 135,018 + PGA1_262p01220 0.69 +0.4
Or see this region's nucleotide sequence