Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00370 and PGA1_262p00380 are separated by 120 nucleotides PGA1_262p00380 and PGA1_262p00390 are separated by 353 nucleotides
PGA1_262p00370: PGA1_262p00370 - putative polysaccharide synthase, at 43,814 to 45,307
_262p00370
PGA1_262p00380: PGA1_262p00380 - sugar transferase, at 45,428 to 46,111
_262p00380
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.491 kb on - strand, within PGA1_262p00370 at 44.566 kb on - strand, within PGA1_262p00370 at 44.760 kb on + strand, within PGA1_262p00370 at 44.773 kb on - strand, within PGA1_262p00370 at 45.037 kb on - strand, within PGA1_262p00370 at 45.047 kb on - strand, within PGA1_262p00370 at 45.096 kb on - strand, within PGA1_262p00370 at 45.277 kb on + strand at 45.279 kb on + strand at 45.365 kb on + strand at 45.392 kb on + strand at 45.392 kb on + strand at 45.400 kb on - strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.410 kb on - strand at 45.413 kb on + strand at 45.413 kb on + strand at 45.428 kb on + strand at 45.535 kb on + strand, within PGA1_262p00380 at 45.543 kb on - strand, within PGA1_262p00380 at 45.565 kb on - strand, within PGA1_262p00380 at 45.608 kb on - strand, within PGA1_262p00380 at 45.769 kb on + strand, within PGA1_262p00380 at 45.788 kb on + strand, within PGA1_262p00380 at 45.796 kb on - strand, within PGA1_262p00380 at 45.881 kb on + strand, within PGA1_262p00380 at 45.890 kb on - strand, within PGA1_262p00380 at 46.146 kb on - strand at 46.149 kb on + strand at 46.254 kb on - strand at 46.290 kb on - strand at 46.290 kb on - strand at 46.308 kb on - strand at 46.318 kb on + strand at 46.431 kb on - strand at 46.432 kb on - strand at 46.460 kb on - strand at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 44,491 - PGA1_262p00370 0.45 -0.4 44,566 - PGA1_262p00370 0.50 +0.3 44,760 + PGA1_262p00370 0.63 -0.4 44,773 - PGA1_262p00370 0.64 -0.7 45,037 - PGA1_262p00370 0.82 +0.3 45,047 - PGA1_262p00370 0.83 -0.0 45,096 - PGA1_262p00370 0.86 +1.0 45,277 + +1.5 45,279 + -0.3 45,365 + -0.0 45,392 + -0.5 45,392 + -0.8 45,400 - +0.3 45,402 + +0.3 45,402 + +0.9 45,402 + +0.2 45,402 + -0.6 45,407 + +0.4 45,407 + -0.8 45,407 + +0.5 45,410 - +1.0 45,413 + +0.3 45,413 + +0.2 45,428 + -0.1 45,535 + PGA1_262p00380 0.16 +1.3 45,543 - PGA1_262p00380 0.17 +0.1 45,565 - PGA1_262p00380 0.20 +1.0 45,608 - PGA1_262p00380 0.26 +0.6 45,769 + PGA1_262p00380 0.50 -0.7 45,788 + PGA1_262p00380 0.53 +0.4 45,796 - PGA1_262p00380 0.54 -1.2 45,881 + PGA1_262p00380 0.66 +1.7 45,890 - PGA1_262p00380 0.68 -0.5 46,146 - -0.6 46,149 + +0.1 46,254 - +0.1 46,290 - +0.8 46,290 - +0.1 46,308 - +0.7 46,318 + -0.2 46,431 - +1.3 46,432 - -0.8 46,460 - -0.2 46,518 + +0.8 46,666 - PGA1_262p00390 0.19 +0.5 46,763 + PGA1_262p00390 0.28 +0.4 46,808 - PGA1_262p00390 0.32 +0.8 46,869 + PGA1_262p00390 0.38 +0.7 46,872 + PGA1_262p00390 0.38 +0.4 46,966 - PGA1_262p00390 0.47 -0.5 46,971 + PGA1_262p00390 0.48 +0.2 46,971 + PGA1_262p00390 0.48 +0.4 46,971 + PGA1_262p00390 0.48 +0.3 46,976 + PGA1_262p00390 0.48 +0.8 47,066 + PGA1_262p00390 0.57 -0.1
Or see this region's nucleotide sequence