Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35580

Experiment: D-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (N)
3,729,614	+		PGA1_c35570	0.31	-0.5
3,729,623	-		PGA1_c35570	0.32	+0.7
3,729,628	+		PGA1_c35570	0.32	+0.5
3,729,631	-		PGA1_c35570	0.32	+0.6
3,729,641	-		PGA1_c35570	0.33	+0.1
3,729,641	-		PGA1_c35570	0.33	+0.9
3,729,657	+		PGA1_c35570	0.34	-0.0
3,729,657	+		PGA1_c35570	0.34	+0.6
3,729,682	+		PGA1_c35570	0.36	+0.4
3,729,725	+		PGA1_c35570	0.39	+0.9
3,729,732	+		PGA1_c35570	0.40	+0.8
3,729,747	+		PGA1_c35570	0.41	+0.5
3,729,748	+		PGA1_c35570	0.41	+0.6
3,729,748	+		PGA1_c35570	0.41	+0.4
3,729,748	+		PGA1_c35570	0.41	-0.4
3,729,798	-		PGA1_c35570	0.45	+0.1
3,729,803	-		PGA1_c35570	0.45	-0.2
3,729,859	-		PGA1_c35570	0.50	-0.3
3,729,870	+		PGA1_c35570	0.50	-0.9
3,729,870	+		PGA1_c35570	0.50	+1.0
3,729,878	-		PGA1_c35570	0.51	+1.1
3,729,878	-		PGA1_c35570	0.51	+0.3
3,729,966	-		PGA1_c35570	0.58	+0.2
3,729,966	-		PGA1_c35570	0.58	-0.3
3,730,015	+		PGA1_c35570	0.61	+0.7
3,730,023	-		PGA1_c35570	0.62	-0.8
3,730,092	-		PGA1_c35570	0.67	+0.4
3,730,107	+		PGA1_c35570	0.68	+0.8
3,730,199	+		PGA1_c35570	0.75	+0.3
3,730,203	+		PGA1_c35570	0.76	+1.3
3,730,207	-		PGA1_c35570	0.76	-0.4
3,730,230	+		PGA1_c35570	0.78	+0.6
3,730,309	+		PGA1_c35570	0.84	-0.7
3,730,310	-		PGA1_c35570	0.84	+0.7
3,730,310	-		PGA1_c35570	0.84	-0.6
3,730,356	+		PGA1_c35570	0.87	+0.6
3,730,365	-		PGA1_c35570	0.88	-0.1
3,730,370	-		PGA1_c35570	0.88	+0.1
3,730,398	-				+0.3
3,730,446	+				-0.3
3,730,454	-				-0.9
3,730,488	+				+0.5
3,730,525	+				-0.4
3,730,570	-				-1.6
3,730,579	-				+0.6
3,730,579	-				+0.2
3,730,580	-				+0.2
3,730,580	-				-0.8
3,730,588	-				+1.0
3,730,605	-				+0.2
3,730,620	-				-0.2
3,730,663	-				-0.0
3,730,693	+				-0.0
3,730,702	-				+0.5
3,730,716	-				+1.1
3,730,716	-				-0.5
3,730,729	+		PGA1_c35580	0.11	-0.3
3,730,729	-		PGA1_c35580	0.11	+0.4
3,730,738	-		PGA1_c35580	0.11	+0.5
3,730,770	+		PGA1_c35580	0.13	+0.9
3,730,810	-		PGA1_c35580	0.16	-0.2
3,730,861	+		PGA1_c35580	0.20	+0.3
3,730,862	-		PGA1_c35580	0.20	+0.8
3,730,869	-		PGA1_c35580	0.20	+1.0
3,730,871	+		PGA1_c35580	0.20	-0.5
3,730,899	+		PGA1_c35580	0.22	+0.2
3,730,912	+		PGA1_c35580	0.23	+1.1
3,730,980	+		PGA1_c35580	0.28	+1.4
3,730,988	-		PGA1_c35580	0.29	+0.2
3,730,988	-		PGA1_c35580	0.29	-0.0
3,730,988	-		PGA1_c35580	0.29	+0.7
3,731,005	+		PGA1_c35580	0.30	-0.2
3,731,027	+		PGA1_c35580	0.31	+0.1
3,731,027	+		PGA1_c35580	0.31	+0.1
3,731,034	+		PGA1_c35580	0.32	-0.4
3,731,034	+		PGA1_c35580	0.32	-0.2
3,731,034	+		PGA1_c35580	0.32	+1.0
3,731,042	-		PGA1_c35580	0.32	+0.3
3,731,042	-		PGA1_c35580	0.32	-0.4
3,731,068	-		PGA1_c35580	0.34	+0.6
3,731,134	-		PGA1_c35580	0.39	+1.5
3,731,169	-		PGA1_c35580	0.41	+0.1
3,731,201	+		PGA1_c35580	0.43	-0.5
3,731,201	+		PGA1_c35580	0.43	-0.4
3,731,209	-		PGA1_c35580	0.44	+1.7
3,731,240	+		PGA1_c35580	0.46	+0.4
3,731,243	-		PGA1_c35580	0.46	+0.4
3,731,283	+		PGA1_c35580	0.49	-0.0
3,731,291	-		PGA1_c35580	0.49	+0.3
3,731,291	-		PGA1_c35580	0.49	+1.7
3,731,330	+		PGA1_c35580	0.52	-0.8
3,731,338	-		PGA1_c35580	0.53	-0.0
3,731,423	+		PGA1_c35580	0.59	+1.5
3,731,439	+		PGA1_c35580	0.60	+0.9
3,731,447	-		PGA1_c35580	0.60	+0.8
3,731,463	+		PGA1_c35580	0.61	+0.5
3,731,471	-		PGA1_c35580	0.62	+0.5
3,731,579	+		PGA1_c35580	0.69	-1.1
3,731,579	+		PGA1_c35580	0.69	+0.8
3,731,579	+		PGA1_c35580	0.69	-0.0
3,731,579	+		PGA1_c35580	0.69	+0.3
3,731,587	-		PGA1_c35580	0.70	+1.0
3,731,587	-		PGA1_c35580	0.70	+0.3
3,731,650	-		PGA1_c35580	0.74	+0.5
3,731,675	-		PGA1_c35580	0.76	+0.5
3,731,722	-		PGA1_c35580	0.79	+0.3
3,731,733	-		PGA1_c35580	0.80	+1.3
3,731,751	+		PGA1_c35580	0.81	+0.4
3,731,763	+		PGA1_c35580	0.82	+1.1
3,731,815	-		PGA1_c35580	0.86	+0.4
3,731,815	-		PGA1_c35580	0.86	+0.1
3,731,904	-				+0.6
3,731,908	-				-0.8
3,731,999	+				-0.6
3,732,009	+				+0.7
3,732,009	+				+0.5
3,732,024	-				+0.4
3,732,043	+				+0.5
3,732,054	+				-0.5
3,732,100	-				+0.5
3,732,197	-		PGA1_c35590	0.17	-0.3
3,732,199	+		PGA1_c35590	0.17	-0.0
3,732,209	+		PGA1_c35590	0.18	-0.1
3,732,209	+		PGA1_c35590	0.18	+0.2
3,732,209	+		PGA1_c35590	0.18	-1.2
3,732,217	-		PGA1_c35590	0.19	+0.3
3,732,217	-		PGA1_c35590	0.19	+0.7
3,732,217	-		PGA1_c35590	0.19	+1.5
3,732,217	-		PGA1_c35590	0.19	+1.9
3,732,217	-		PGA1_c35590	0.19	-0.0
3,732,227	+		PGA1_c35590	0.20	-0.7
3,732,241	-		PGA1_c35590	0.21	+0.1
3,732,279	-		PGA1_c35590	0.25	+0.2
3,732,324	+		PGA1_c35590	0.29	+0.8
3,732,332	-		PGA1_c35590	0.30	+0.3
3,732,332	-		PGA1_c35590	0.30	+0.6
3,732,376	+		PGA1_c35590	0.35	+0.6
3,732,378	-		PGA1_c35590	0.35	+0.5
3,732,383	-		PGA1_c35590	0.35	-0.4
3,732,383	-		PGA1_c35590	0.35	+1.3
3,732,384	-		PGA1_c35590	0.35	-0.9
3,732,384	-		PGA1_c35590	0.35	+0.7
3,732,386	+		PGA1_c35590	0.36	+0.2
3,732,456	+		PGA1_c35590	0.43	+0.3
3,732,456	+		PGA1_c35590	0.43	+0.1
3,732,464	-		PGA1_c35590	0.43	+0.4
3,732,471	+		PGA1_c35590	0.44	+1.5
3,732,479	-		PGA1_c35590	0.45	-1.7
3,732,488	-		PGA1_c35590	0.46	+1.4
3,732,514	-		PGA1_c35590	0.48	+0.5
3,732,521	-		PGA1_c35590	0.49	+0.0
3,732,540	-		PGA1_c35590	0.51	-0.4
3,732,540	-		PGA1_c35590	0.51	+0.6
3,732,545	-		PGA1_c35590	0.51	+0.1
3,732,550	-		PGA1_c35590	0.52	+0.7
3,732,554	-		PGA1_c35590	0.52	+0.2
3,732,554	-		PGA1_c35590	0.52	-0.2
3,732,590	+		PGA1_c35590	0.56	+1.1
3,732,590	+		PGA1_c35590	0.56	+0.2
3,732,598	-		PGA1_c35590	0.57	-0.1
3,732,598	-		PGA1_c35590	0.57	-1.5
3,732,609	-		PGA1_c35590	0.58	+0.2
3,732,609	-		PGA1_c35590	0.58	-0.3
3,732,614	-		PGA1_c35590	0.58	+0.2
3,732,676	+		PGA1_c35590	0.64	+1.0
3,732,690	+		PGA1_c35590	0.66	-0.6
3,732,698	-		PGA1_c35590	0.67	-0.7
3,732,698	-		PGA1_c35590	0.67	+0.2
3,732,747	+		PGA1_c35590	0.71	+0.3
3,732,772	+		PGA1_c35590	0.74	+1.3
3,732,778	+		PGA1_c35590	0.75	+0.6
3,732,786	-		PGA1_c35590	0.75	+0.2
3,732,786	-		PGA1_c35590	0.75	+1.1
3,732,786	-		PGA1_c35590	0.75	-0.5
3,732,819	+		PGA1_c35590	0.79	-0.0
3,732,837	+		PGA1_c35590	0.80	+1.4
3,732,852	+		PGA1_c35590	0.82	-1.9
3,732,879	+		PGA1_c35590	0.85	+2.4
3,732,887	-		PGA1_c35590	0.85	+0.4
3,732,887	-		PGA1_c35590	0.85	+1.2
3,732,897	-		PGA1_c35590	0.86	-1.3
3,732,945	+				-0.1
3,733,020	+				+0.3