Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03070

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03060 and PGA1_c03070 are separated by 106 nucleotidesPGA1_c03070 and PGA1_c03080 are separated by 76 nucleotidesPGA1_c03080 and PGA1_c03090 are separated by 137 nucleotides PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799 _c03060 PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667 _c03070 PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286 _c03080 PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914 _c03090 Position (kb) 293 294 295Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 293.003 kb on + strand, within PGA1_c03060at 293.191 kb on - strand, within PGA1_c03060at 293.259 kb on + strand, within PGA1_c03060at 293.259 kb on + strand, within PGA1_c03060at 293.261 kb on + strand, within PGA1_c03060at 293.272 kb on + strand, within PGA1_c03060at 293.280 kb on - strand, within PGA1_c03060at 293.350 kb on + strand, within PGA1_c03060at 293.363 kb on - strand, within PGA1_c03060at 293.419 kb on + strand, within PGA1_c03060at 293.500 kb on - strand, within PGA1_c03060at 293.535 kb on - strand, within PGA1_c03060at 293.553 kb on - strand, within PGA1_c03060at 293.623 kb on + strand, within PGA1_c03060at 293.637 kb on - strand, within PGA1_c03060at 293.641 kb on - strand, within PGA1_c03060at 293.641 kb on - strand, within PGA1_c03060at 293.643 kb on + strand, within PGA1_c03060at 293.651 kb on - strand, within PGA1_c03060at 293.676 kb on + strand, within PGA1_c03060at 293.676 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.684 kb on - strand, within PGA1_c03060at 293.687 kb on - strand, within PGA1_c03060at 293.790 kb on - strandat 293.794 kb on + strandat 293.797 kb on - strandat 293.806 kb on + strandat 293.825 kb on + strandat 293.825 kb on + strandat 293.825 kb on + strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.836 kb on + strandat 293.836 kb on + strandat 293.836 kb on + strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.858 kb on + strandat 293.879 kb on - strandat 293.882 kb on + strandat 293.892 kb on + strandat 294.640 kb on + strandat 294.648 kb on - strandat 294.648 kb on - strandat 294.729 kb on - strandat 294.734 kb on + strandat 294.742 kb on - strandat 294.742 kb on - strandat 294.753 kb on + strandat 294.800 kb on - strand, within PGA1_c03080at 294.811 kb on + strand, within PGA1_c03080at 294.982 kb on + strand, within PGA1_c03080at 294.982 kb on + strand, within PGA1_c03080at 294.987 kb on + strand, within PGA1_c03080at 295.017 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.128 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.269 kb on + strandat 295.269 kb on + strandat 295.291 kb on + strandat 295.291 kb on + strandat 295.291 kb on + strandat 295.307 kb on + strandat 295.307 kb on + strandat 295.315 kb on - strandat 295.316 kb on - strandat 295.317 kb on - strandat 295.318 kb on + strandat 295.332 kb on - strandat 295.337 kb on - strandat 295.357 kb on - strandat 295.517 kb on + strandat 295.517 kb on + strandat 295.653 kb on + strand, within PGA1_c03090at 295.653 kb on + strand, within PGA1_c03090

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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293,003 + PGA1_c03060 0.20 -2.3
293,191 - PGA1_c03060 0.39 -1.2
293,259 + PGA1_c03060 0.46 -3.4
293,259 + PGA1_c03060 0.46 -3.1
293,261 + PGA1_c03060 0.46 -3.3
293,272 + PGA1_c03060 0.47 -3.6
293,280 - PGA1_c03060 0.48 -2.6
293,350 + PGA1_c03060 0.55 -2.7
293,363 - PGA1_c03060 0.56 -3.0
293,419 + PGA1_c03060 0.62 -3.0
293,500 - PGA1_c03060 0.70 -2.3
293,535 - PGA1_c03060 0.73 -3.2
293,553 - PGA1_c03060 0.75 -1.3
293,623 + PGA1_c03060 0.82 -3.1
293,637 - PGA1_c03060 0.84 -1.5
293,641 - PGA1_c03060 0.84 -4.2
293,641 - PGA1_c03060 0.84 -1.9
293,643 + PGA1_c03060 0.84 -2.0
293,651 - PGA1_c03060 0.85 -2.6
293,676 + PGA1_c03060 0.88 -2.2
293,676 + PGA1_c03060 0.88 -1.2
293,679 + PGA1_c03060 0.88 -2.5
293,679 + PGA1_c03060 0.88 -2.1
293,679 + PGA1_c03060 0.88 -3.6
293,679 + PGA1_c03060 0.88 -2.0
293,679 + PGA1_c03060 0.88 -3.1
293,684 - PGA1_c03060 0.88 -1.2
293,687 - PGA1_c03060 0.89 -3.5
293,790 - -2.8
293,794 + -1.2
293,797 - -2.8
293,806 + -0.9
293,825 + +0.4
293,825 + -0.5
293,825 + -0.0
293,832 - +0.1
293,832 - +0.1
293,832 - -0.2
293,832 - +0.3
293,832 - +0.8
293,836 + +0.7
293,836 + -0.6
293,836 + -0.4
293,844 - -1.6
293,844 - -0.8
293,844 - +1.5
293,844 - +1.1
293,858 + -0.4
293,879 - -0.3
293,882 + +1.6
293,892 + -1.3
294,640 + +0.0
294,648 - +1.0
294,648 - -0.9
294,729 - +0.5
294,734 + +0.7
294,742 - +1.1
294,742 - +0.1
294,753 + +0.6
294,800 - PGA1_c03080 0.10 -0.6
294,811 + PGA1_c03080 0.12 +1.2
294,982 + PGA1_c03080 0.44 +1.0
294,982 + PGA1_c03080 0.44 -0.4
294,987 + PGA1_c03080 0.45 +0.4
295,017 + PGA1_c03080 0.50 +0.2
295,062 + PGA1_c03080 0.59 +0.2
295,062 + PGA1_c03080 0.59 -0.5
295,062 + PGA1_c03080 0.59 +1.0
295,128 + PGA1_c03080 0.71 -0.4
295,165 + PGA1_c03080 0.78 +0.7
295,165 + PGA1_c03080 0.78 +1.6
295,165 + PGA1_c03080 0.78 +1.1
295,269 + -0.6
295,269 + +0.5
295,291 + -0.6
295,291 + +0.8
295,291 + +0.1
295,307 + -1.0
295,307 + -1.2
295,315 - +0.7
295,316 - +0.4
295,317 - +0.2
295,318 + -2.5
295,332 - -0.1
295,337 - -0.6
295,357 - -1.0
295,517 + +0.3
295,517 + +0.5
295,653 + PGA1_c03090 0.15 +0.2
295,653 + PGA1_c03090 0.15 -0.1

Or see this region's nucleotide sequence