Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25740

Experiment: D-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (N)
2,679,893	+		PGA1_c25720	0.62	+0.5
2,679,901	-		PGA1_c25720	0.63	-0.5
2,679,973	+		PGA1_c25720	0.71	+0.5
2,679,973	+		PGA1_c25720	0.71	+0.1
2,679,973	+		PGA1_c25720	0.71	-0.9
2,679,981	-		PGA1_c25720	0.72	+0.3
2,679,981	-		PGA1_c25720	0.72	+0.6
2,679,981	-		PGA1_c25720	0.72	+0.3
2,679,981	-		PGA1_c25720	0.72	-1.2
2,679,981	-		PGA1_c25720	0.72	-1.2
2,680,121	+		PGA1_c25720	0.88	-0.6
2,680,154	-				+0.2
2,680,304	+				-0.2
2,680,379	+		PGA1_c25730	0.15	-0.8
2,680,386	+		PGA1_c25730	0.17	-0.9
2,680,416	-		PGA1_c25730	0.28	-0.6
2,680,437	+		PGA1_c25730	0.35	-0.4
2,680,437	+		PGA1_c25730	0.35	-0.7
2,680,437	-		PGA1_c25730	0.35	-0.9
2,680,445	-		PGA1_c25730	0.38	-1.0
2,680,445	-		PGA1_c25730	0.38	-0.8
2,680,450	-		PGA1_c25730	0.40	-0.9
2,680,462	+		PGA1_c25730	0.44	-0.1
2,680,472	-		PGA1_c25730	0.48	+0.5
2,680,520	+		PGA1_c25730	0.65	+0.7
2,680,527	-		PGA1_c25730	0.67	+0.3
2,680,538	-		PGA1_c25730	0.71	+1.1
2,680,544	-		PGA1_c25730	0.73	+0.1
2,680,573	-		PGA1_c25730	0.83	-0.2
2,680,585	+		PGA1_c25730	0.88	+0.2
2,680,675	-				-0.7
2,680,702	+				+0.3
2,680,855	+				+0.0
2,680,861	+				-0.2
2,680,888	+				+1.5
2,680,888	+				-0.5
2,680,916	-				+1.3
2,680,959	+				+0.2
2,680,959	+				+0.1
2,680,967	-				+1.0
2,680,975	+				+1.0
2,681,004	+				-0.1
2,681,113	-				+0.4
2,681,113	-				+0.2
2,681,113	-				+1.3
2,681,394	+		PGA1_c25740	0.18	+0.9
2,681,394	+		PGA1_c25740	0.18	+0.3
2,681,405	+		PGA1_c25740	0.19	-0.7
2,681,481	+		PGA1_c25740	0.22	+0.7
2,681,546	-		PGA1_c25740	0.24	+0.7
2,681,592	-		PGA1_c25740	0.26	+0.6
2,681,694	-		PGA1_c25740	0.29	+0.1
2,681,767	+		PGA1_c25740	0.32	+0.5
2,681,767	+		PGA1_c25740	0.32	-0.5
2,681,767	+		PGA1_c25740	0.32	+0.6
2,681,767	+		PGA1_c25740	0.32	-0.6
2,681,767	+		PGA1_c25740	0.32	-2.3
2,681,767	+		PGA1_c25740	0.32	+0.7
2,681,767	+		PGA1_c25740	0.32	+0.8
2,681,767	+		PGA1_c25740	0.32	+1.1
2,681,775	-		PGA1_c25740	0.32	+0.3
2,681,775	-		PGA1_c25740	0.32	+0.1
2,681,775	-		PGA1_c25740	0.32	+0.7
2,681,775	-		PGA1_c25740	0.32	+1.5
2,681,775	-		PGA1_c25740	0.32	+0.9
2,681,820	-		PGA1_c25740	0.34	+0.9
2,681,825	+		PGA1_c25740	0.34	+0.3
2,681,843	-		PGA1_c25740	0.35	+0.4
2,681,853	-		PGA1_c25740	0.35	+0.4
2,681,957	-		PGA1_c25740	0.39	-0.2
2,682,008	+		PGA1_c25740	0.41	-0.1
2,682,017	+		PGA1_c25740	0.41	+0.3
2,682,118	-		PGA1_c25740	0.45	-0.1
2,682,134	+		PGA1_c25740	0.45	+0.6
2,682,142	-		PGA1_c25740	0.45	-0.1
2,682,166	+		PGA1_c25740	0.46	+0.0
2,682,174	-		PGA1_c25740	0.47	+1.0
2,682,176	+		PGA1_c25740	0.47	+0.2
2,682,288	+		PGA1_c25740	0.51	+0.8
2,682,296	-		PGA1_c25740	0.51	+0.7
2,682,306	-		PGA1_c25740	0.51	+1.7
2,682,311	-		PGA1_c25740	0.52	+1.2
2,682,335	+		PGA1_c25740	0.52	+0.6
2,682,335	+		PGA1_c25740	0.52	+0.6
2,682,335	+		PGA1_c25740	0.52	+0.6
2,682,335	+		PGA1_c25740	0.52	-0.2
2,682,335	+		PGA1_c25740	0.52	+0.9
2,682,335	+		PGA1_c25740	0.52	+1.3
2,682,335	+		PGA1_c25740	0.52	+1.3
2,682,335	+		PGA1_c25740	0.52	+0.0
2,682,335	+		PGA1_c25740	0.52	+0.5
2,682,343	-		PGA1_c25740	0.53	+1.0
2,682,343	-		PGA1_c25740	0.53	+0.4
2,682,343	-		PGA1_c25740	0.53	+0.1
2,682,343	-		PGA1_c25740	0.53	+1.4
2,682,343	-		PGA1_c25740	0.53	+0.4
2,682,343	-		PGA1_c25740	0.53	+0.4
2,682,343	-		PGA1_c25740	0.53	+1.1
2,682,389	+		PGA1_c25740	0.54	+0.2
2,682,389	-		PGA1_c25740	0.54	-0.3
2,682,397	-		PGA1_c25740	0.55	-0.0
2,682,436	-		PGA1_c25740	0.56	+0.3
2,682,494	-		PGA1_c25740	0.58	-0.1
2,682,496	+		PGA1_c25740	0.58	+0.8
2,682,562	-		PGA1_c25740	0.61	-0.2
2,682,601	+		PGA1_c25740	0.62	+1.5
2,682,609	-		PGA1_c25740	0.62	+0.9
2,682,609	-		PGA1_c25740	0.62	+0.5
2,682,633	+		PGA1_c25740	0.63	+1.6
2,682,771	-		PGA1_c25740	0.68	+0.1
2,682,845	+		PGA1_c25740	0.71	+0.4
2,682,885	-		PGA1_c25740	0.72	+0.8
2,682,903	-		PGA1_c25740	0.73	+0.6
2,682,918	-		PGA1_c25740	0.73	+0.8
2,682,918	-		PGA1_c25740	0.73	+1.5
2,682,960	-		PGA1_c25740	0.75	-1.4
2,683,149	-		PGA1_c25740	0.82	+1.4
2,683,289	+		PGA1_c25740	0.87	+1.4
2,683,297	+		PGA1_c25740	0.87	+0.1
2,683,330	+		PGA1_c25740	0.88	+0.3
2,683,330	+		PGA1_c25740	0.88	+0.4
2,683,338	-		PGA1_c25740	0.89	+0.7
2,683,366	+		PGA1_c25740	0.90	-0.1
2,683,366	+		PGA1_c25740	0.90	-0.1
2,683,442	-				-0.1
2,683,480	+				-0.3
2,683,501	-				+0.1
2,683,593	+				+0.8
2,683,593	+				-0.6
2,683,606	-				+0.3
2,683,609	+				+0.9
2,683,609	+				+0.8
2,683,609	+				-1.2
2,683,609	+				+1.1
2,683,609	+				+0.8
2,683,609	+				+0.2
2,683,617	-				-0.3
2,683,617	-				+0.7
2,683,617	-				-0.2
2,683,657	+				+0.3
2,683,657	+				+1.5
2,683,657	+				+0.1
2,683,657	+				-0.3
2,683,657	+				+0.6
2,683,659	-				-0.1
2,683,665	-				-2.1
2,683,665	-				+0.7
2,683,665	-				+0.3
2,683,665	-				+0.9
2,683,665	-				-0.1
2,683,687	-				+0.1
2,683,706	-				+0.6
2,683,713	-				+0.9
2,683,713	-				+0.7
2,683,713	-				+0.6
2,683,713	-				+1.3
2,683,715	+				+0.2
2,683,715	+				+0.1
2,683,723	-				+0.2
2,683,723	-				+0.3
2,683,723	-				+1.2
2,683,736	-				+0.9
2,683,752	+				-0.3
2,683,760	-				+1.0
2,683,839	-		PGA1_c25750	0.10	+1.2
2,683,875	+		PGA1_c25750	0.12	+0.2
2,683,888	-		PGA1_c25750	0.13	+0.5
2,683,960	-		PGA1_c25750	0.17	+0.9
2,684,011	-		PGA1_c25750	0.20	+0.9
2,684,011	-		PGA1_c25750	0.20	-0.1
2,684,133	+		PGA1_c25750	0.27	+1.4
2,684,141	+		PGA1_c25750	0.28	+0.4
2,684,180	-		PGA1_c25750	0.30	+0.4
2,684,180	-		PGA1_c25750	0.30	-1.7
2,684,193	+		PGA1_c25750	0.31	+0.5
2,684,232	-		PGA1_c25750	0.33	+0.8
2,684,233	+		PGA1_c25750	0.33	+0.7
2,684,252	+		PGA1_c25750	0.34	+1.2
2,684,274	+		PGA1_c25750	0.36	+0.8
2,684,374	-		PGA1_c25750	0.41	+0.0
2,684,489	-		PGA1_c25750	0.48	+0.9
2,684,520	+		PGA1_c25750	0.50	-1.8
2,684,557	+		PGA1_c25750	0.52	+0.4
2,684,570	+		PGA1_c25750	0.53	+0.6
2,684,570	+		PGA1_c25750	0.53	+0.8
2,684,578	-		PGA1_c25750	0.53	-0.1
2,684,626	+		PGA1_c25750	0.56	+0.3