Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14130

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14120 and PGA1_c14130 are separated by 344 nucleotidesPGA1_c14130 and PGA1_c14140 are separated by 295 nucleotidesPGA1_c14140 and PGA1_c14150 are separated by 47 nucleotides PGA1_c14120: PGA1_c14120 - single-stranded DNA-binding protein Ssb, at 1,464,821 to 1,465,363 _c14120 PGA1_c14130: PGA1_c14130 - transglycolase-like protein, at 1,465,708 to 1,466,292 _c14130 PGA1_c14140: PGA1_c14140 - hypothetical protein, at 1,466,588 to 1,466,962 _c14140 PGA1_c14150: PGA1_c14150 - glutathione import ATP-binding protein GsiA, at 1,467,010 to 1,469,097 _c14150 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -2 -1 0 1 2at 1464.747 kb on + strandat 1464.753 kb on + strandat 1464.753 kb on + strandat 1464.755 kb on - strandat 1464.761 kb on - strandat 1464.766 kb on + strandat 1464.766 kb on + strandat 1464.766 kb on + strandat 1464.766 kb on - strandat 1464.768 kb on + strandat 1464.768 kb on + strandat 1464.768 kb on + strandat 1464.774 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.790 kb on + strandat 1465.575 kb on + strandat 1465.606 kb on + strandat 1465.619 kb on + strandat 1465.675 kb on - strandat 1465.675 kb on - strandat 1465.675 kb on - strandat 1465.675 kb on - strandat 1465.675 kb on - strandat 1465.718 kb on - strandat 1465.735 kb on + strandat 1465.735 kb on - strandat 1465.737 kb on + strandat 1465.742 kb on + strandat 1465.784 kb on - strand, within PGA1_c14130at 1465.835 kb on - strand, within PGA1_c14130at 1465.838 kb on + strand, within PGA1_c14130at 1465.846 kb on - strand, within PGA1_c14130at 1465.846 kb on - strand, within PGA1_c14130at 1465.872 kb on + strand, within PGA1_c14130at 1465.907 kb on + strand, within PGA1_c14130at 1465.911 kb on + strand, within PGA1_c14130at 1465.911 kb on + strand, within PGA1_c14130at 1465.929 kb on - strand, within PGA1_c14130at 1465.958 kb on + strand, within PGA1_c14130at 1465.995 kb on - strand, within PGA1_c14130at 1466.029 kb on - strand, within PGA1_c14130at 1466.099 kb on - strand, within PGA1_c14130at 1466.169 kb on + strand, within PGA1_c14130at 1466.285 kb on - strandat 1466.288 kb on + strandat 1466.288 kb on + strandat 1466.288 kb on + strandat 1466.288 kb on + strandat 1466.296 kb on - strandat 1466.296 kb on - strandat 1466.326 kb on + strandat 1466.345 kb on - strandat 1466.421 kb on + strandat 1466.429 kb on - strandat 1466.449 kb on + strandat 1466.476 kb on + strandat 1466.476 kb on + strandat 1466.476 kb on + strandat 1466.476 kb on + strandat 1466.498 kb on + strandat 1466.535 kb on - strandat 1466.538 kb on + strandat 1466.538 kb on + strandat 1466.558 kb on + strandat 1466.566 kb on - strandat 1466.566 kb on - strandat 1466.613 kb on + strandat 1466.621 kb on - strandat 1466.645 kb on - strand, within PGA1_c14140at 1466.670 kb on + strand, within PGA1_c14140at 1466.751 kb on + strand, within PGA1_c14140at 1466.751 kb on + strand, within PGA1_c14140at 1466.759 kb on - strand, within PGA1_c14140at 1466.818 kb on + strand, within PGA1_c14140at 1466.964 kb on - strandat 1466.989 kb on - strandat 1467.094 kb on - strandat 1467.114 kb on + strandat 1467.125 kb on - strandat 1467.131 kb on - strandat 1467.224 kb on + strand, within PGA1_c14150at 1467.273 kb on - strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.281 kb on + strand, within PGA1_c14150at 1467.289 kb on - strand, within PGA1_c14150

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,464,747 + -1.0
1,464,753 + -0.9
1,464,753 + +0.1
1,464,755 - -0.2
1,464,761 - -0.2
1,464,766 + -0.3
1,464,766 + +0.7
1,464,766 + -0.4
1,464,766 - +1.0
1,464,768 + -0.2
1,464,768 + -0.8
1,464,768 + +0.2
1,464,774 - -0.5
1,464,776 - -0.3
1,464,776 - +0.8
1,464,776 - +0.5
1,464,776 - +0.2
1,464,790 + -0.1
1,465,575 + -0.9
1,465,606 + -0.2
1,465,619 + +0.1
1,465,675 - +0.5
1,465,675 - +0.5
1,465,675 - -1.9
1,465,675 - +0.5
1,465,675 - -0.5
1,465,718 - -0.1
1,465,735 + -1.3
1,465,735 - -1.6
1,465,737 + -0.2
1,465,742 + +0.7
1,465,784 - PGA1_c14130 0.13 -0.7
1,465,835 - PGA1_c14130 0.22 +0.5
1,465,838 + PGA1_c14130 0.22 +1.1
1,465,846 - PGA1_c14130 0.24 +0.3
1,465,846 - PGA1_c14130 0.24 +0.6
1,465,872 + PGA1_c14130 0.28 +0.0
1,465,907 + PGA1_c14130 0.34 -0.6
1,465,911 + PGA1_c14130 0.35 +0.8
1,465,911 + PGA1_c14130 0.35 -0.3
1,465,929 - PGA1_c14130 0.38 +0.7
1,465,958 + PGA1_c14130 0.43 +0.7
1,465,995 - PGA1_c14130 0.49 +0.5
1,466,029 - PGA1_c14130 0.55 +2.0
1,466,099 - PGA1_c14130 0.67 +0.4
1,466,169 + PGA1_c14130 0.79 -0.7
1,466,285 - +0.3
1,466,288 + +0.1
1,466,288 + +0.0
1,466,288 + -0.4
1,466,288 + +0.2
1,466,296 - +0.2
1,466,296 - -0.5
1,466,326 + +0.7
1,466,345 - +0.1
1,466,421 + -0.8
1,466,429 - -1.5
1,466,449 + +0.2
1,466,476 + -0.3
1,466,476 + -0.0
1,466,476 + +0.1
1,466,476 + -1.2
1,466,498 + +0.7
1,466,535 - -0.5
1,466,538 + +0.2
1,466,538 + +0.4
1,466,558 + -0.7
1,466,566 - -0.2
1,466,566 - +0.3
1,466,613 + -0.6
1,466,621 - -0.3
1,466,645 - PGA1_c14140 0.15 +1.3
1,466,670 + PGA1_c14140 0.22 -0.1
1,466,751 + PGA1_c14140 0.43 -0.2
1,466,751 + PGA1_c14140 0.43 +1.0
1,466,759 - PGA1_c14140 0.46 +0.7
1,466,818 + PGA1_c14140 0.61 -0.7
1,466,964 - -0.4
1,466,989 - -0.5
1,467,094 - -0.4
1,467,114 + -0.7
1,467,125 - +1.0
1,467,131 - +0.3
1,467,224 + PGA1_c14150 0.10 +0.1
1,467,273 - PGA1_c14150 0.13 -1.0
1,467,281 + PGA1_c14150 0.13 -1.0
1,467,281 + PGA1_c14150 0.13 -0.5
1,467,281 + PGA1_c14150 0.13 +0.5
1,467,281 + PGA1_c14150 0.13 +0.1
1,467,281 + PGA1_c14150 0.13 -0.5
1,467,281 + PGA1_c14150 0.13 -0.8
1,467,281 + PGA1_c14150 0.13 +0.9
1,467,289 - PGA1_c14150 0.13 -0.1

Or see this region's nucleotide sequence