Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10585

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10580 and PGA1_c10585 are separated by 187 nucleotidesPGA1_c10585 and PGA1_c10590 are separated by 223 nucleotides PGA1_c10580: PGA1_c10580 - ribonuclease J 1, at 1,093,842 to 1,095,509 _c10580 PGA1_c10585: PGA1_c10585 - hypothetical protein, at 1,095,697 to 1,095,870 _c10585 PGA1_c10590: PGA1_c10590 - putative ATP-dependent RNA helicase RhlE, at 1,096,094 to 1,097,644 _c10590 Position (kb) 1095 1096Strain fitness (log2 ratio) -1 0 1at 1094.751 kb on + strand, within PGA1_c10580at 1094.800 kb on + strand, within PGA1_c10580at 1095.232 kb on + strand, within PGA1_c10580at 1095.232 kb on + strand, within PGA1_c10580at 1095.323 kb on + strand, within PGA1_c10580at 1095.323 kb on + strand, within PGA1_c10580at 1095.338 kb on + strand, within PGA1_c10580at 1095.338 kb on + strand, within PGA1_c10580at 1095.346 kb on - strandat 1095.387 kb on + strandat 1095.494 kb on - strandat 1095.529 kb on + strandat 1095.589 kb on + strandat 1095.767 kb on - strand, within PGA1_c10585at 1095.816 kb on + strand, within PGA1_c10585at 1095.822 kb on - strand, within PGA1_c10585at 1095.822 kb on - strand, within PGA1_c10585at 1095.822 kb on - strand, within PGA1_c10585at 1095.915 kb on - strandat 1095.926 kb on - strandat 1096.106 kb on + strandat 1096.535 kb on - strand, within PGA1_c10590

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,094,751 + PGA1_c10580 0.54 -0.9
1,094,800 + PGA1_c10580 0.57 -0.7
1,095,232 + PGA1_c10580 0.83 +0.7
1,095,232 + PGA1_c10580 0.83 -0.6
1,095,323 + PGA1_c10580 0.89 +0.4
1,095,323 + PGA1_c10580 0.89 -0.2
1,095,338 + PGA1_c10580 0.90 +0.5
1,095,338 + PGA1_c10580 0.90 -0.4
1,095,346 - -1.4
1,095,387 + +0.7
1,095,494 - -0.0
1,095,529 + -0.4
1,095,589 + +1.7
1,095,767 - PGA1_c10585 0.40 -1.6
1,095,816 + PGA1_c10585 0.68 +1.4
1,095,822 - PGA1_c10585 0.72 +0.7
1,095,822 - PGA1_c10585 0.72 -0.6
1,095,822 - PGA1_c10585 0.72 -0.1
1,095,915 - +1.0
1,095,926 - -0.5
1,096,106 + -1.0
1,096,535 - PGA1_c10590 0.28 -0.8

Or see this region's nucleotide sequence