Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01018

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
1,098,915	+		CCNA_01017	0.46	-1.0
1,098,915	+		CCNA_01017	0.46	-1.6
1,098,915	+		CCNA_01017	0.46	-1.0
1,098,923	-		CCNA_01017	0.47	-2.3
1,098,932	+		CCNA_01017	0.47	-0.1
1,098,940	-		CCNA_01017	0.48	-0.3
1,098,940	-		CCNA_01017	0.48	-0.1
1,099,012	-				+1.7
1,099,017	-		CCNA_01017	0.53	+0.0
1,099,032	+		CCNA_01017	0.54	-0.3
1,099,040	-		CCNA_01017	0.54	-1.0
1,099,044	+		CCNA_01017	0.54	-0.5
1,099,052	-		CCNA_01017	0.55	-1.2
1,099,073	+		CCNA_01017	0.56	-0.6
1,099,095	+		CCNA_01017	0.58	+0.2
1,099,095	+		CCNA_01017	0.58	-0.6
1,099,095	+		CCNA_01017	0.58	+0.5
1,099,103	-		CCNA_01017	0.58	-0.5
1,099,111	-		CCNA_01017	0.59	-1.3
1,099,165	-		CCNA_01017	0.62	-1.2
1,099,233	+		CCNA_01017	0.66	-0.2
1,099,284	-		CCNA_01017	0.69	-1.4
1,099,306	+		CCNA_01017	0.71	+1.9
1,099,306	+		CCNA_01017	0.71	-0.3
1,099,306	+		CCNA_01017	0.71	-0.6
1,099,339	+		CCNA_01017	0.73	-0.8
1,099,401	+		CCNA_01017	0.77	-1.3
1,099,427	+		CCNA_01017	0.78	-0.3
1,099,435	-		CCNA_01017	0.79	-0.6
1,099,447	-		CCNA_01017	0.80	-1.3
1,099,471	+		CCNA_01017	0.81	-0.9
1,099,471	+		CCNA_01017	0.81	+0.2
1,099,479	-		CCNA_01017	0.82	+0.7
1,099,486	+		CCNA_01017	0.82	-0.5
1,099,486	+		CCNA_01017	0.82	-1.1
1,099,492	-		CCNA_01017	0.82	-0.9
1,099,518	+		CCNA_01017	0.84	-0.4
1,099,567	+		CCNA_01017	0.87	-2.2
1,099,651	+				-0.3
1,099,659	-				-0.6
1,099,659	-				-1.2
1,099,659	-				+0.2
1,099,660	+				-0.2
1,099,660	+				-0.6
1,099,685	+				+0.4
1,099,746	-				-0.0
1,099,746	-				-2.0
1,099,746	-				-2.3
1,099,748	-				-0.6
1,099,757	+				-0.0
1,099,794	-				-0.3
1,099,806	+				+0.0
1,099,837	+				-1.2
1,099,866	-				-0.1
1,099,888	-				-0.2
1,099,910	+				+0.0
1,099,912	+				+2.7
1,099,912	+				+0.5
1,099,920	-				+0.4
1,099,920	-				+0.5
1,099,920	-				+0.7
1,099,920	-				+0.1
1,099,920	-				-1.0
1,099,920	-				+1.3
1,099,925	-				+0.4
1,100,015	+		CCNA_01018	0.13	-0.7
1,100,082	+		CCNA_01018	0.20	-1.2
1,100,090	-		CCNA_01018	0.21	-0.3
1,100,090	-		CCNA_01018	0.21	-0.0
1,100,116	-		CCNA_01018	0.24	-0.1
1,100,117	+		CCNA_01018	0.24	-1.5
1,100,117	+		CCNA_01018	0.24	-1.0
1,100,139	-		CCNA_01018	0.26	+1.3
1,100,139	-		CCNA_01018	0.26	-0.8
1,100,189	+		CCNA_01018	0.31	-0.3
1,100,194	+				+0.1
1,100,197	-		CCNA_01018	0.32	+0.2
1,100,197	-		CCNA_01018	0.32	-0.6
1,100,198	+		CCNA_01018	0.32	-0.8
1,100,202	-		CCNA_01018	0.33	+1.3
1,100,207	-		CCNA_01018	0.33	-0.5
1,100,211	+		CCNA_01018	0.34	-1.0
1,100,252	-		CCNA_01018	0.38	-1.0
1,100,294	-		CCNA_01018	0.43	-0.8
1,100,313	-		CCNA_01018	0.45	+0.9
1,100,320	+		CCNA_01018	0.46	-1.8
1,100,351	+		CCNA_01018	0.49	+0.1
1,100,352	+		CCNA_01018	0.49	-0.8
1,100,352	+		CCNA_01018	0.49	-0.5
1,100,360	-		CCNA_01018	0.50	-0.8
1,100,360	-		CCNA_01018	0.50	-1.4
1,100,384	-		CCNA_01018	0.53	-0.5
1,100,393	-		CCNA_01018	0.54	+0.9
1,100,438	-		CCNA_01018	0.58	-2.5
1,100,441	+		CCNA_01018	0.59	+1.7
1,100,444	-		CCNA_01018	0.59	+0.2
1,100,449	-		CCNA_01018	0.60	-0.9
1,100,449	-		CCNA_01018	0.60	-0.1
1,100,496	-		CCNA_01018	0.65	-1.1
1,100,496	-		CCNA_01018	0.65	-1.9
1,100,498	-		CCNA_01018	0.65	-1.8
1,100,632	-		CCNA_01018	0.79	-0.2
1,100,642	+		CCNA_01018	0.81	+0.4
1,100,712	-		CCNA_01018	0.88	+0.1
1,100,722	-		CCNA_01018	0.89	-0.5
1,100,751	+				+0.8
1,100,759	-				-0.6
1,100,795	-				+0.1
1,100,833	+				+0.1
1,100,836	-				+0.0
1,100,891	-				-1.2
1,100,891	-				-0.1
1,100,891	-				+0.7
1,100,930	+				-0.0
1,100,936	-				-0.4
1,100,938	-				+0.1
1,100,946	-				-1.2
1,100,983	-				+0.3
1,100,987	+				-0.5
1,101,014	+				-2.1
1,101,027	-				+0.2
1,101,032	+				-0.2
1,101,045	-				-0.5
1,101,045	-				+0.1
1,101,047	+				+0.5
1,101,067	-				-0.3
1,101,078	+				-0.3
1,101,081	-				-0.5
1,101,086	-				-0.3
1,101,086	-				-0.2
1,101,120	-				+0.1
1,101,120	-				-0.8
1,101,120	-				-0.1
1,101,120	-				+0.9
1,101,169	+				-0.9
1,101,188	-				-0.2
1,101,236	-		CCNA_01019	0.11	+0.2
1,101,254	+		CCNA_01019	0.12	-0.7
1,101,254	+		CCNA_01019	0.12	+0.3
1,101,254	+		CCNA_01019	0.12	+0.1
1,101,254	+		CCNA_01019	0.12	+1.7
1,101,254	+		CCNA_01019	0.12	-0.3
1,101,254	+		CCNA_01019	0.12	+0.7
1,101,254	+		CCNA_01019	0.12	-1.7
1,101,254	+		CCNA_01019	0.12	-0.5
1,101,254	+		CCNA_01019	0.12	-1.6
1,101,254	+		CCNA_01019	0.12	-0.2
1,101,254	+		CCNA_01019	0.12	-0.6
1,101,254	+		CCNA_01019	0.12	-1.4
1,101,254	+		CCNA_01019	0.12	-0.2
1,101,254	+		CCNA_01019	0.12	-0.8
1,101,254	+		CCNA_01019	0.12	-0.2
1,101,262	-		CCNA_01019	0.12	-1.3
1,101,262	-		CCNA_01019	0.12	-0.5
1,101,262	-		CCNA_01019	0.12	-1.9
1,101,262	-		CCNA_01019	0.12	-0.1
1,101,262	-		CCNA_01019	0.12	-0.1
1,101,262	-		CCNA_01019	0.12	-1.7
1,101,262	-		CCNA_01019	0.12	-1.8
1,101,262	-		CCNA_01019	0.12	+1.1
1,101,262	-		CCNA_01019	0.12	+2.5
1,101,271	+		CCNA_01019	0.12	+0.5
1,101,296	+		CCNA_01019	0.13	-0.9
1,101,303	+		CCNA_01019	0.14	-0.5
1,101,348	+		CCNA_01019	0.16	-0.3
1,101,348	-		CCNA_01019	0.16	+0.5
1,101,353	+		CCNA_01019	0.16	-0.5
1,101,368	+		CCNA_01019	0.17	-0.4
1,101,368	+		CCNA_01019	0.17	+1.7
1,101,368	+		CCNA_01019	0.17	-0.8
1,101,373	+		CCNA_01019	0.17	-0.8
1,101,374	-		CCNA_01019	0.17	-0.0
1,101,376	-		CCNA_01019	0.17	+0.1
1,101,376	-		CCNA_01019	0.17	-0.2
1,101,376	-		CCNA_01019	0.17	-0.2
1,101,376	-		CCNA_01019	0.17	-2.3
1,101,376	-		CCNA_01019	0.17	+0.6
1,101,376	-		CCNA_01019	0.17	-0.4
1,101,378	+		CCNA_01019	0.17	-0.0
1,101,381	-		CCNA_01019	0.17	-1.2
1,101,381	-		CCNA_01019	0.17	-0.1
1,101,393	-		CCNA_01019	0.18	-0.2
1,101,415	-		CCNA_01019	0.19	-0.4
1,101,427	+		CCNA_01019	0.19	-2.2
1,101,497	-		CCNA_01019	0.22	-0.2
1,101,497	-		CCNA_01019	0.22	-0.2
1,101,512	-		CCNA_01019	0.23	-0.5
1,101,538	-		CCNA_01019	0.24	-1.5
1,101,577	+		CCNA_01019	0.26	+0.1
1,101,577	+		CCNA_01019	0.26	-0.9
1,101,582	+		CCNA_01019	0.26	-1.0
1,101,585	-		CCNA_01019	0.26	-1.4
1,101,585	-		CCNA_01019	0.26	-0.1
1,101,590	-		CCNA_01019	0.26	+0.9
1,101,590	-		CCNA_01019	0.26	+0.1
1,101,597	-		CCNA_01019	0.27	-0.3
1,101,638	+		CCNA_01019	0.28	-0.5
1,101,646	-		CCNA_01019	0.29	-2.0
1,101,656	-		CCNA_01019	0.29	+0.5
1,101,672	-		CCNA_01019	0.30	-1.8
1,101,717	-		CCNA_01019	0.32	-0.3
1,101,718	-		CCNA_01019	0.32	-0.6
1,101,736	+		CCNA_01019	0.33	-2.0
1,101,736	-		CCNA_01019	0.33	-0.4
1,101,753	+		CCNA_01019	0.33	-0.8
1,101,753	+		CCNA_01019	0.33	-0.0
1,101,754	+		CCNA_01019	0.33	-0.5
1,101,762	-		CCNA_01019	0.34	+0.6
1,101,762	-		CCNA_01019	0.34	+0.0
1,101,797	+		CCNA_01019	0.35	-0.1
1,101,797	+		CCNA_01019	0.35	+0.9
1,101,797	+		CCNA_01019	0.35	-2.0
1,101,797	+		CCNA_01019	0.35	+2.7
1,101,797	+		CCNA_01019	0.35	-1.1
1,101,797	+		CCNA_01019	0.35	-0.7
1,101,797	+		CCNA_01019	0.35	+0.6
1,101,797	+		CCNA_01019	0.35	+0.6
1,101,797	+		CCNA_01019	0.35	+2.1
1,101,805	-		CCNA_01019	0.36	+0.7
1,101,805	-		CCNA_01019	0.36	-0.9
1,101,810	-		CCNA_01019	0.36	-1.6