Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00051

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00050 and CCNA_00051 overlap by 4 nucleotidesCCNA_00051 and CCNA_00052 are separated by 8 nucleotidesCCNA_00052 and CCNA_00053 are separated by 37 nucleotides CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 CCNA_00053: CCNA_00053 - phosphate starvation-inducible protein PhoH, at 55,724 to 56,668 _00053 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 53.339 kb on - strand, within CCNA_00050at 53.353 kb on - strand, within CCNA_00050at 53.357 kb on - strand, within CCNA_00050at 53.374 kb on + strand, within CCNA_00050at 53.382 kb on - strand, within CCNA_00050at 53.419 kb on - strand, within CCNA_00050at 53.485 kb on - strand, within CCNA_00050at 53.495 kb on - strand, within CCNA_00050at 53.505 kb on - strand, within CCNA_00050at 53.511 kb on + strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.596 kb on - strand, within CCNA_00050at 53.600 kb on + strand, within CCNA_00050at 53.635 kb on + strand, within CCNA_00050at 53.637 kb on - strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.675 kb on - strand, within CCNA_00050at 53.757 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.780 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.793 kb on - strand, within CCNA_00050at 53.821 kb on - strand, within CCNA_00050at 53.867 kb on + strand, within CCNA_00050at 53.875 kb on - strand, within CCNA_00050at 53.913 kb on + strand, within CCNA_00050at 53.913 kb on + strand, within CCNA_00050at 53.921 kb on - strand, within CCNA_00050at 53.945 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.972 kb on - strand, within CCNA_00050at 53.976 kb on + strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.984 kb on - strand, within CCNA_00050at 53.984 kb on - strand, within CCNA_00050at 54.054 kb on + strand, within CCNA_00050at 54.136 kb on + strand, within CCNA_00050at 54.183 kb on - strandat 54.251 kb on + strandat 54.251 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.381 kb on + strandat 54.459 kb on + strand, within CCNA_00051at 54.459 kb on + strand, within CCNA_00051at 54.470 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.500 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.506 kb on - strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.528 kb on - strand, within CCNA_00051at 54.533 kb on + strand, within CCNA_00051at 54.538 kb on + strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.560 kb on - strand, within CCNA_00051at 54.561 kb on - strand, within CCNA_00051at 54.599 kb on + strand, within CCNA_00051at 54.636 kb on + strand, within CCNA_00051at 54.647 kb on + strand, within CCNA_00051at 54.687 kb on - strand, within CCNA_00051at 54.713 kb on + strand, within CCNA_00051at 54.721 kb on - strand, within CCNA_00051at 54.751 kb on + strand, within CCNA_00051at 54.770 kb on + strand, within CCNA_00051at 54.778 kb on - strand, within CCNA_00051at 54.792 kb on - strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.804 kb on + strand, within CCNA_00051at 54.822 kb on - strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 55.015 kb on - strand, within CCNA_00051at 55.035 kb on - strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.045 kb on - strand, within CCNA_00051at 55.133 kb on + strandat 55.152 kb on + strandat 55.152 kb on + strandat 55.204 kb on - strandat 55.206 kb on - strandat 55.220 kb on - strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.227 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.234 kb on + strandat 55.253 kb on + strandat 55.260 kb on - strandat 55.270 kb on + strandat 55.669 kb on - strandat 55.679 kb on + strandat 55.696 kb on + strandat 55.720 kb on + strandat 55.736 kb on + strandat 55.744 kb on - strandat 55.768 kb on - strandat 55.824 kb on + strand, within CCNA_00053at 55.830 kb on + strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.855 kb on - strand, within CCNA_00053at 55.862 kb on + strand, within CCNA_00053at 55.874 kb on - strand, within CCNA_00053at 55.882 kb on + strand, within CCNA_00053at 55.899 kb on - strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.959 kb on - strand, within CCNA_00053at 55.964 kb on - strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 56.007 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.050 kb on + strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.186 kb on + strand, within CCNA_00053at 56.209 kb on + strand, within CCNA_00053

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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53,339 - CCNA_00050 0.40 -3.1
53,353 - CCNA_00050 0.41 -1.0
53,357 - CCNA_00050 0.41 -3.9
53,374 + CCNA_00050 0.42 -0.8
53,382 - CCNA_00050 0.42 -1.1
53,419 - CCNA_00050 0.45 -2.4
53,485 - CCNA_00050 0.49 -1.2
53,495 - CCNA_00050 0.49 -4.5
53,505 - CCNA_00050 0.50 -0.8
53,511 + CCNA_00050 0.50 -0.7
53,549 - CCNA_00050 0.53 -2.6
53,549 - CCNA_00050 0.53 -2.0
53,596 - CCNA_00050 0.56 -1.7
53,600 + CCNA_00050 0.56 -1.6
53,635 + CCNA_00050 0.58 -1.2
53,637 - CCNA_00050 0.58 -1.7
53,641 + CCNA_00050 0.59 -1.9
53,641 + CCNA_00050 0.59 -0.7
53,649 - CCNA_00050 0.59 -2.4
53,649 - CCNA_00050 0.59 -1.0
53,675 - CCNA_00050 0.61 -2.0
53,757 + CCNA_00050 0.66 -0.5
53,777 + CCNA_00050 0.67 -1.1
53,777 + CCNA_00050 0.67 -3.1
53,777 + CCNA_00050 0.67 -1.8
53,777 + CCNA_00050 0.67 -1.7
53,780 - CCNA_00050 0.67 -3.3
53,785 - CCNA_00050 0.68 -3.2
53,785 - CCNA_00050 0.68 -2.6
53,785 - CCNA_00050 0.68 -3.5
53,785 - CCNA_00050 0.68 -3.0
53,793 - CCNA_00050 0.68 -1.1
53,821 - CCNA_00050 0.70 -1.5
53,867 + CCNA_00050 0.73 -0.2
53,875 - CCNA_00050 0.73 +1.0
53,913 + CCNA_00050 0.76 -0.2
53,913 + CCNA_00050 0.76 -0.4
53,921 - CCNA_00050 0.76 -2.3
53,945 + CCNA_00050 0.78 -1.5
53,950 + CCNA_00050 0.78 -1.7
53,950 + CCNA_00050 0.78 -3.0
53,950 + CCNA_00050 0.78 +0.3
53,950 + CCNA_00050 0.78 -1.4
53,958 - CCNA_00050 0.79 +0.8
53,958 - CCNA_00050 0.79 -4.1
53,958 - CCNA_00050 0.79 -1.6
53,971 + CCNA_00050 0.79 -0.8
53,971 + CCNA_00050 0.79 -1.2
53,971 + CCNA_00050 0.79 -1.6
53,971 + CCNA_00050 0.79 -3.0
53,971 + CCNA_00050 0.79 -2.0
53,971 + CCNA_00050 0.79 -0.6
53,972 - CCNA_00050 0.79 -4.2
53,976 + CCNA_00050 0.80 -1.9
53,979 - CCNA_00050 0.80 -3.2
53,979 - CCNA_00050 0.80 -2.4
53,979 - CCNA_00050 0.80 -0.5
53,979 - CCNA_00050 0.80 -2.4
53,979 - CCNA_00050 0.80 -1.9
53,979 - CCNA_00050 0.80 -2.6
53,984 - CCNA_00050 0.80 -1.6
53,984 - CCNA_00050 0.80 -1.9
54,054 + CCNA_00050 0.85 -2.1
54,136 + CCNA_00050 0.90 -2.1
54,183 - -3.1
54,251 + -1.1
54,251 + -0.4
54,262 + -0.6
54,262 + -1.2
54,262 + +0.5
54,270 - -0.0
54,270 - -0.2
54,270 - -1.1
54,270 - -2.7
54,270 - -0.8
54,270 - -0.4
54,381 + -1.0
54,459 + CCNA_00051 0.18 -2.0
54,459 + CCNA_00051 0.18 -1.0
54,470 + CCNA_00051 0.19 -2.0
54,494 + CCNA_00051 0.21 -1.0
54,494 + CCNA_00051 0.21 -0.8
54,500 - CCNA_00051 0.22 -1.4
54,502 - CCNA_00051 0.22 -0.7
54,502 - CCNA_00051 0.22 -0.9
54,506 - CCNA_00051 0.23 +0.1
54,520 + CCNA_00051 0.24 -0.4
54,520 + CCNA_00051 0.24 -1.5
54,526 + CCNA_00051 0.25 +0.6
54,526 + CCNA_00051 0.25 -0.7
54,528 - CCNA_00051 0.25 -0.7
54,533 + CCNA_00051 0.26 -1.5
54,538 + CCNA_00051 0.26 -0.2
54,551 - CCNA_00051 0.28 -1.5
54,551 - CCNA_00051 0.28 +0.3
54,560 - CCNA_00051 0.28 -0.4
54,561 - CCNA_00051 0.29 -0.5
54,599 + CCNA_00051 0.33 -0.6
54,636 + CCNA_00051 0.37 -1.9
54,647 + CCNA_00051 0.38 -1.3
54,687 - CCNA_00051 0.42 -0.1
54,713 + CCNA_00051 0.45 -0.8
54,721 - CCNA_00051 0.46 +0.2
54,751 + CCNA_00051 0.49 -3.7
54,770 + CCNA_00051 0.51 -0.8
54,778 - CCNA_00051 0.52 +0.8
54,792 - CCNA_00051 0.54 -1.3
54,793 - CCNA_00051 0.54 -1.8
54,804 + CCNA_00051 0.55 -0.1
54,822 - CCNA_00051 0.57 -0.8
54,829 + CCNA_00051 0.57 -2.6
54,829 + CCNA_00051 0.57 -2.1
54,870 + CCNA_00051 0.62 -0.0
54,878 - CCNA_00051 0.63 -0.4
55,015 - CCNA_00051 0.78 -0.3
55,035 - CCNA_00051 0.80 -0.5
55,044 + CCNA_00051 0.81 -1.8
55,044 + CCNA_00051 0.81 -0.1
55,045 - CCNA_00051 0.81 -1.2
55,133 + -0.1
55,152 + -1.0
55,152 + -0.1
55,204 - -0.2
55,206 - -1.2
55,220 - +0.2
55,224 + -2.4
55,224 + -1.7
55,224 + +0.3
55,224 + -1.1
55,227 - -0.9
55,232 - -0.5
55,232 - -0.1
55,232 - -0.7
55,232 - -0.3
55,232 - -0.3
55,232 - -0.6
55,232 - -1.4
55,232 - +0.8
55,232 - -0.2
55,232 - -0.1
55,232 - +0.3
55,234 + -0.3
55,253 + -0.7
55,260 - -1.2
55,270 + +0.2
55,669 - -0.4
55,679 + -1.4
55,696 + -0.1
55,720 + -1.0
55,736 + -2.6
55,744 - -1.1
55,768 - -1.0
55,824 + CCNA_00053 0.11 -0.0
55,830 + CCNA_00053 0.11 +1.4
55,838 - CCNA_00053 0.12 +0.1
55,838 - CCNA_00053 0.12 -0.7
55,838 - CCNA_00053 0.12 +0.2
55,855 - CCNA_00053 0.14 -0.2
55,862 + CCNA_00053 0.15 +0.0
55,874 - CCNA_00053 0.16 +0.5
55,882 + CCNA_00053 0.17 -0.8
55,899 - CCNA_00053 0.19 -1.0
55,946 + CCNA_00053 0.23 -0.8
55,959 - CCNA_00053 0.25 +0.6
55,964 - CCNA_00053 0.25 +0.7
55,979 + CCNA_00053 0.27 -0.7
55,979 + CCNA_00053 0.27 +0.0
55,979 + CCNA_00053 0.27 -0.8
55,987 - CCNA_00053 0.28 -0.0
55,987 - CCNA_00053 0.28 +0.2
55,987 - CCNA_00053 0.28 -0.3
55,987 - CCNA_00053 0.28 -0.1
55,987 - CCNA_00053 0.28 -0.1
55,987 - CCNA_00053 0.28 +0.0
55,987 - CCNA_00053 0.28 -0.6
56,007 - CCNA_00053 0.30 +0.0
56,025 - CCNA_00053 0.32 -0.8
56,025 - CCNA_00053 0.32 -0.4
56,049 + CCNA_00053 0.34 -1.7
56,049 + CCNA_00053 0.34 -0.9
56,050 + CCNA_00053 0.34 -0.5
56,089 - CCNA_00053 0.39 -0.5
56,089 - CCNA_00053 0.39 -0.1
56,186 + CCNA_00053 0.49 +1.0
56,209 + CCNA_00053 0.51 -0.7

Or see this region's nucleotide sequence