Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01865 and BWI76_RS01870 are separated by 129 nucleotides BWI76_RS01870 and BWI76_RS01875 are separated by 122 nucleotides BWI76_RS01875 and BWI76_RS01880 are separated by 69 nucleotides
BWI76_RS01865: BWI76_RS01865 - glycerol-3-phosphate 1-O-acyltransferase, at 380,061 to 382,484
_RS01865
BWI76_RS01870: BWI76_RS01870 - diacylglycerol kinase, at 382,614 to 382,982
_RS01870
BWI76_RS01875: BWI76_RS01875 - repressor LexA, at 383,105 to 383,713
_RS01875
BWI76_RS01880: BWI76_RS01880 - MATE family efflux transporter, at 383,783 to 385,099
_RS01880
Position (kb) 382
383 Strain fitness (log2 ratio) -2
-1
0
1 at 382.488 kb on - strand at 382.536 kb on - strand at 382.571 kb on + strand at 382.571 kb on + strand at 382.571 kb on + strand at 382.627 kb on + strand at 382.764 kb on - strand, within BWI76_RS01870 at 382.798 kb on - strand, within BWI76_RS01870 at 382.803 kb on - strand, within BWI76_RS01870 at 382.873 kb on + strand, within BWI76_RS01870 at 382.907 kb on - strand, within BWI76_RS01870 at 382.995 kb on - strand at 383.810 kb on + strand at 383.868 kb on - strand at 383.899 kb on - strand at 383.927 kb on - strand, within BWI76_RS01880 at 383.952 kb on + strand, within BWI76_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 382,488 - +0.7 382,536 - -0.6 382,571 + +0.2 382,571 + -1.3 382,571 + -0.1 382,627 + -0.3 382,764 - BWI76_RS01870 0.41 -0.9 382,798 - BWI76_RS01870 0.50 -1.5 382,803 - BWI76_RS01870 0.51 -0.8 382,873 + BWI76_RS01870 0.70 -2.0 382,907 - BWI76_RS01870 0.79 -2.5 382,995 - -0.2 383,810 + +1.4 383,868 - -0.3 383,899 - -1.1 383,927 - BWI76_RS01880 0.11 -0.4 383,952 + BWI76_RS01880 0.13 +0.6
Or see this region's nucleotide sequence