Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2744 and Dshi_2745 are separated by 60 nucleotides Dshi_2745 and Dshi_2746 are separated by 31 nucleotides Dshi_2746 and Dshi_2747 are separated by 121 nucleotides Dshi_2747 and Dshi_2748 are separated by 7 nucleotides
Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515
_2744
Dshi_2745: Dshi_2745 - phenazine biosynthesis protein PhzF family (RefSeq), at 2,907,576 to 2,908,436
_2745
Dshi_2746: Dshi_2746 - hypothetical protein (RefSeq), at 2,908,468 to 2,908,728
_2746
Dshi_2747: Dshi_2747 - hypothetical protein (RefSeq), at 2,908,850 to 2,909,440
_2747
Dshi_2748: Dshi_2748 - glutamyl-tRNA synthetase (RefSeq), at 2,909,448 to 2,910,770
_2748
Position (kb)
2908
2909 Strain fitness (log2 ratio)
-1
0
1 at 2907.610 kb on + strand at 2907.677 kb on + strand, within Dshi_2745 at 2907.824 kb on + strand, within Dshi_2745 at 2907.921 kb on - strand, within Dshi_2745 at 2907.935 kb on - strand, within Dshi_2745 at 2907.939 kb on + strand, within Dshi_2745 at 2908.113 kb on + strand, within Dshi_2745 at 2908.397 kb on + strand at 2908.466 kb on + strand at 2908.687 kb on - strand, within Dshi_2746 at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.780 kb on + strand at 2908.788 kb on - strand at 2908.921 kb on - strand, within Dshi_2747 at 2908.928 kb on - strand, within Dshi_2747 at 2909.058 kb on + strand, within Dshi_2747 at 2909.135 kb on - strand, within Dshi_2747 at 2909.363 kb on + strand, within Dshi_2747
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 2,907,610 + +0.8 2,907,677 + Dshi_2745 0.12 +0.4 2,907,824 + Dshi_2745 0.29 +1.0 2,907,921 - Dshi_2745 0.40 +1.0 2,907,935 - Dshi_2745 0.42 -0.0 2,907,939 + Dshi_2745 0.42 +0.8 2,908,113 + Dshi_2745 0.62 +0.4 2,908,397 + -0.5 2,908,466 + +0.2 2,908,687 - Dshi_2746 0.84 -0.5 2,908,780 + -0.8 2,908,780 + +0.3 2,908,780 + +1.0 2,908,780 + -0.3 2,908,780 + +0.2 2,908,780 + -1.4 2,908,788 - +0.1 2,908,921 - Dshi_2747 0.12 +0.4 2,908,928 - Dshi_2747 0.13 -0.0 2,909,058 + Dshi_2747 0.35 -0.1 2,909,135 - Dshi_2747 0.48 -0.2 2,909,363 + Dshi_2747 0.87 -1.1
Or see this region's nucleotide sequence