Experiment: BG11 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0594 and Synpcc7942_0595 overlap by 32 nucleotides Synpcc7942_0595 and Synpcc7942_0596 are separated by 97 nucleotides
Synpcc7942_0594: Synpcc7942_0594 - hypothetical protein, at 581,205 to 582,881
_0594
Synpcc7942_0595: Synpcc7942_0595 - hypothetical protein, at 582,850 to 583,398
_0595
Synpcc7942_0596: Synpcc7942_0596 - delta(24)-sterol C-methyltransferase, at 583,496 to 584,428
_0596
Position (kb) 582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 581.861 kb on + strand, within Synpcc7942_0594 at 581.869 kb on - strand, within Synpcc7942_0594 at 581.869 kb on - strand, within Synpcc7942_0594 at 581.899 kb on + strand, within Synpcc7942_0594 at 581.907 kb on - strand, within Synpcc7942_0594 at 581.907 kb on - strand, within Synpcc7942_0594 at 581.917 kb on - strand at 581.928 kb on - strand, within Synpcc7942_0594 at 581.948 kb on + strand at 581.956 kb on - strand, within Synpcc7942_0594 at 581.956 kb on - strand, within Synpcc7942_0594 at 581.981 kb on + strand, within Synpcc7942_0594 at 581.996 kb on + strand, within Synpcc7942_0594 at 582.004 kb on - strand, within Synpcc7942_0594 at 582.010 kb on + strand, within Synpcc7942_0594 at 582.025 kb on + strand, within Synpcc7942_0594 at 582.031 kb on + strand, within Synpcc7942_0594 at 582.033 kb on - strand, within Synpcc7942_0594 at 582.033 kb on - strand, within Synpcc7942_0594 at 582.063 kb on - strand, within Synpcc7942_0594 at 582.069 kb on - strand, within Synpcc7942_0594 at 582.092 kb on - strand, within Synpcc7942_0594 at 582.098 kb on + strand, within Synpcc7942_0594 at 582.109 kb on + strand, within Synpcc7942_0594 at 582.110 kb on + strand, within Synpcc7942_0594 at 582.110 kb on + strand, within Synpcc7942_0594 at 582.129 kb on + strand, within Synpcc7942_0594 at 582.129 kb on + strand, within Synpcc7942_0594 at 582.129 kb on + strand, within Synpcc7942_0594 at 582.129 kb on + strand, within Synpcc7942_0594 at 582.134 kb on + strand, within Synpcc7942_0594 at 582.136 kb on + strand, within Synpcc7942_0594 at 582.152 kb on + strand, within Synpcc7942_0594 at 582.158 kb on + strand, within Synpcc7942_0594 at 582.160 kb on - strand, within Synpcc7942_0594 at 582.166 kb on - strand, within Synpcc7942_0594 at 582.166 kb on - strand, within Synpcc7942_0594 at 582.166 kb on - strand at 582.237 kb on + strand, within Synpcc7942_0594 at 582.256 kb on + strand, within Synpcc7942_0594 at 582.296 kb on + strand, within Synpcc7942_0594 at 582.337 kb on + strand, within Synpcc7942_0594 at 582.345 kb on - strand, within Synpcc7942_0594 at 582.353 kb on + strand, within Synpcc7942_0594 at 582.359 kb on - strand, within Synpcc7942_0594 at 582.378 kb on - strand, within Synpcc7942_0594 at 582.391 kb on - strand, within Synpcc7942_0594 at 582.430 kb on - strand at 582.435 kb on - strand, within Synpcc7942_0594 at 582.469 kb on + strand, within Synpcc7942_0594 at 582.486 kb on + strand, within Synpcc7942_0594 at 582.491 kb on + strand, within Synpcc7942_0594 at 582.494 kb on - strand, within Synpcc7942_0594 at 582.511 kb on + strand, within Synpcc7942_0594 at 582.556 kb on + strand, within Synpcc7942_0594 at 582.567 kb on + strand at 582.577 kb on - strand, within Synpcc7942_0594 at 582.586 kb on - strand, within Synpcc7942_0594 at 582.632 kb on - strand, within Synpcc7942_0594 at 582.638 kb on - strand, within Synpcc7942_0594 at 582.638 kb on - strand, within Synpcc7942_0594 at 582.640 kb on + strand, within Synpcc7942_0594 at 582.640 kb on + strand, within Synpcc7942_0594 at 582.648 kb on + strand, within Synpcc7942_0594 at 582.648 kb on - strand, within Synpcc7942_0594 at 582.663 kb on - strand, within Synpcc7942_0594 at 582.668 kb on - strand, within Synpcc7942_0594 at 582.673 kb on + strand, within Synpcc7942_0594 at 582.678 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.696 kb on - strand, within Synpcc7942_0594 at 582.696 kb on - strand, within Synpcc7942_0594 at 582.698 kb on + strand, within Synpcc7942_0594 at 582.714 kb on - strand at 582.744 kb on + strand at 582.744 kb on + strand at 582.744 kb on + strand at 582.745 kb on + strand at 582.745 kb on + strand at 582.745 kb on + strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.776 kb on + strand at 582.868 kb on - strand at 582.869 kb on + strand at 582.869 kb on + strand at 582.902 kb on - strand at 582.903 kb on - strand at 582.950 kb on - strand, within Synpcc7942_0595 at 582.963 kb on - strand, within Synpcc7942_0595 at 582.970 kb on - strand, within Synpcc7942_0595 at 582.971 kb on + strand, within Synpcc7942_0595 at 582.977 kb on + strand, within Synpcc7942_0595 at 583.022 kb on + strand, within Synpcc7942_0595 at 583.028 kb on + strand, within Synpcc7942_0595 at 583.117 kb on + strand, within Synpcc7942_0595 at 583.130 kb on - strand, within Synpcc7942_0595 at 583.139 kb on - strand, within Synpcc7942_0595 at 583.179 kb on + strand, within Synpcc7942_0595 at 583.195 kb on + strand, within Synpcc7942_0595 at 583.202 kb on + strand, within Synpcc7942_0595 at 583.203 kb on - strand, within Synpcc7942_0595 at 583.235 kb on + strand, within Synpcc7942_0595 at 583.235 kb on + strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.255 kb on - strand, within Synpcc7942_0595 at 583.255 kb on - strand, within Synpcc7942_0595 at 583.257 kb on + strand, within Synpcc7942_0595 at 583.257 kb on + strand, within Synpcc7942_0595 at 583.330 kb on + strand, within Synpcc7942_0595 at 583.342 kb on + strand, within Synpcc7942_0595 at 583.355 kb on - strand at 583.423 kb on + strand at 583.429 kb on + strand at 583.436 kb on - strand at 583.436 kb on - strand at 583.460 kb on + strand at 583.469 kb on + strand at 583.548 kb on + strand at 583.556 kb on - strand at 583.558 kb on + strand at 583.590 kb on + strand, within Synpcc7942_0596 at 583.600 kb on + strand, within Synpcc7942_0596 at 583.609 kb on + strand, within Synpcc7942_0596 at 583.611 kb on + strand, within Synpcc7942_0596 at 583.677 kb on - strand, within Synpcc7942_0596 at 583.694 kb on + strand, within Synpcc7942_0596 at 583.741 kb on + strand, within Synpcc7942_0596 at 583.741 kb on + strand, within Synpcc7942_0596 at 583.749 kb on - strand, within Synpcc7942_0596 at 583.765 kb on + strand, within Synpcc7942_0596 at 583.773 kb on - strand, within Synpcc7942_0596 at 583.775 kb on + strand, within Synpcc7942_0596 at 583.781 kb on + strand, within Synpcc7942_0596 at 583.783 kb on - strand, within Synpcc7942_0596 at 583.783 kb on - strand, within Synpcc7942_0596 at 583.898 kb on + strand, within Synpcc7942_0596 at 583.908 kb on - strand, within Synpcc7942_0596 at 583.915 kb on + strand, within Synpcc7942_0596 at 583.918 kb on - strand, within Synpcc7942_0596 at 583.959 kb on + strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.969 kb on + strand, within Synpcc7942_0596 at 583.970 kb on + strand, within Synpcc7942_0596 at 583.977 kb on - strand, within Synpcc7942_0596 at 583.986 kb on - strand, within Synpcc7942_0596 at 583.996 kb on - strand, within Synpcc7942_0596 at 583.996 kb on - strand, within Synpcc7942_0596 at 584.004 kb on + strand, within Synpcc7942_0596 at 584.037 kb on + strand, within Synpcc7942_0596 at 584.046 kb on - strand, within Synpcc7942_0596 at 584.046 kb on - strand, within Synpcc7942_0596 at 584.059 kb on + strand, within Synpcc7942_0596 at 584.108 kb on + strand, within Synpcc7942_0596 at 584.109 kb on + strand, within Synpcc7942_0596 at 584.136 kb on + strand, within Synpcc7942_0596 at 584.167 kb on - strand, within Synpcc7942_0596 at 584.171 kb on + strand, within Synpcc7942_0596 at 584.189 kb on - strand, within Synpcc7942_0596 at 584.191 kb on + strand, within Synpcc7942_0596 at 584.191 kb on - strand, within Synpcc7942_0596 at 584.208 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.224 kb on + strand, within Synpcc7942_0596 at 584.249 kb on + strand, within Synpcc7942_0596 at 584.249 kb on + strand, within Synpcc7942_0596 at 584.281 kb on + strand, within Synpcc7942_0596 at 584.282 kb on + strand, within Synpcc7942_0596 at 584.290 kb on - strand, within Synpcc7942_0596 at 584.300 kb on + strand, within Synpcc7942_0596 at 584.309 kb on + strand, within Synpcc7942_0596 at 584.319 kb on + strand, within Synpcc7942_0596 at 584.327 kb on - strand, within Synpcc7942_0596 at 584.329 kb on + strand, within Synpcc7942_0596 at 584.337 kb on - strand at 584.343 kb on + strand at 584.348 kb on + strand at 584.382 kb on + strand at 584.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 125 mM remove 581,861 + Synpcc7942_0594 0.39 +2.9 581,869 - Synpcc7942_0594 0.40 -0.6 581,869 - Synpcc7942_0594 0.40 -0.4 581,899 + Synpcc7942_0594 0.41 -1.0 581,907 - Synpcc7942_0594 0.42 +0.0 581,907 - Synpcc7942_0594 0.42 +1.3 581,917 - -0.6 581,928 - Synpcc7942_0594 0.43 +1.6 581,948 + +0.6 581,956 - Synpcc7942_0594 0.45 +0.7 581,956 - Synpcc7942_0594 0.45 -1.0 581,981 + Synpcc7942_0594 0.46 +0.0 581,996 + Synpcc7942_0594 0.47 -2.3 582,004 - Synpcc7942_0594 0.48 +0.0 582,010 + Synpcc7942_0594 0.48 -0.8 582,025 + Synpcc7942_0594 0.49 -0.8 582,031 + Synpcc7942_0594 0.49 +0.6 582,033 - Synpcc7942_0594 0.49 -1.5 582,033 - Synpcc7942_0594 0.49 +0.2 582,063 - Synpcc7942_0594 0.51 -1.2 582,069 - Synpcc7942_0594 0.52 +0.6 582,092 - Synpcc7942_0594 0.53 -0.3 582,098 + Synpcc7942_0594 0.53 +0.9 582,109 + Synpcc7942_0594 0.54 +1.2 582,110 + Synpcc7942_0594 0.54 -1.0 582,110 + Synpcc7942_0594 0.54 +0.3 582,129 + Synpcc7942_0594 0.55 -0.4 582,129 + Synpcc7942_0594 0.55 -0.4 582,129 + Synpcc7942_0594 0.55 +1.2 582,129 + Synpcc7942_0594 0.55 -1.6 582,134 + Synpcc7942_0594 0.55 +0.6 582,136 + Synpcc7942_0594 0.56 +1.3 582,152 + Synpcc7942_0594 0.56 +0.7 582,158 + Synpcc7942_0594 0.57 -0.4 582,160 - Synpcc7942_0594 0.57 -2.2 582,166 - Synpcc7942_0594 0.57 +0.4 582,166 - Synpcc7942_0594 0.57 -0.4 582,166 - +0.6 582,237 + Synpcc7942_0594 0.62 +0.4 582,256 + Synpcc7942_0594 0.63 -1.4 582,296 + Synpcc7942_0594 0.65 -1.3 582,337 + Synpcc7942_0594 0.68 -0.5 582,345 - Synpcc7942_0594 0.68 +0.4 582,353 + Synpcc7942_0594 0.68 -0.7 582,359 - Synpcc7942_0594 0.69 -0.1 582,378 - Synpcc7942_0594 0.70 +1.2 582,391 - Synpcc7942_0594 0.71 +0.6 582,430 - +2.2 582,435 - Synpcc7942_0594 0.73 +1.8 582,469 + Synpcc7942_0594 0.75 +1.8 582,486 + Synpcc7942_0594 0.76 -0.2 582,491 + Synpcc7942_0594 0.77 -0.8 582,494 - Synpcc7942_0594 0.77 -0.2 582,511 + Synpcc7942_0594 0.78 +0.5 582,556 + Synpcc7942_0594 0.81 +0.1 582,567 + +1.2 582,577 - Synpcc7942_0594 0.82 -1.0 582,586 - Synpcc7942_0594 0.82 +0.4 582,632 - Synpcc7942_0594 0.85 +0.9 582,638 - Synpcc7942_0594 0.85 +0.7 582,638 - Synpcc7942_0594 0.85 +0.4 582,640 + Synpcc7942_0594 0.86 -0.3 582,640 + Synpcc7942_0594 0.86 -0.4 582,648 + Synpcc7942_0594 0.86 -0.4 582,648 - Synpcc7942_0594 0.86 +2.2 582,663 - Synpcc7942_0594 0.87 -1.0 582,668 - Synpcc7942_0594 0.87 +0.9 582,673 + Synpcc7942_0594 0.88 +0.9 582,678 + Synpcc7942_0594 0.88 -0.5 582,688 + Synpcc7942_0594 0.88 -2.1 582,688 + Synpcc7942_0594 0.88 -0.0 582,688 + Synpcc7942_0594 0.88 +0.0 582,688 + Synpcc7942_0594 0.88 +0.2 582,688 + Synpcc7942_0594 0.88 -1.5 582,696 - Synpcc7942_0594 0.89 -0.2 582,696 - Synpcc7942_0594 0.89 -1.4 582,698 + Synpcc7942_0594 0.89 +1.1 582,714 - +0.7 582,744 + +0.3 582,744 + +0.2 582,744 + -1.2 582,745 + -1.2 582,745 + -0.3 582,745 + -0.2 582,752 - -0.2 582,752 - +0.4 582,752 - +0.2 582,752 - +0.9 582,752 - -0.3 582,776 + -0.2 582,868 - -1.4 582,869 + -0.1 582,869 + -0.2 582,902 - +1.6 582,903 - +0.9 582,950 - Synpcc7942_0595 0.18 +0.8 582,963 - Synpcc7942_0595 0.21 -0.2 582,970 - Synpcc7942_0595 0.22 -1.0 582,971 + Synpcc7942_0595 0.22 +2.2 582,977 + Synpcc7942_0595 0.23 -0.4 583,022 + Synpcc7942_0595 0.31 -1.0 583,028 + Synpcc7942_0595 0.32 +0.7 583,117 + Synpcc7942_0595 0.49 +1.4 583,130 - Synpcc7942_0595 0.51 +0.3 583,139 - Synpcc7942_0595 0.53 -0.7 583,179 + Synpcc7942_0595 0.60 -3.1 583,195 + Synpcc7942_0595 0.63 +0.5 583,202 + Synpcc7942_0595 0.64 -1.3 583,203 - Synpcc7942_0595 0.64 -1.5 583,235 + Synpcc7942_0595 0.70 +0.7 583,235 + Synpcc7942_0595 0.70 -1.0 583,243 - Synpcc7942_0595 0.72 -0.1 583,243 - Synpcc7942_0595 0.72 -0.2 583,243 - Synpcc7942_0595 0.72 -0.0 583,255 - Synpcc7942_0595 0.74 +0.9 583,255 - Synpcc7942_0595 0.74 -1.3 583,257 + Synpcc7942_0595 0.74 +1.0 583,257 + Synpcc7942_0595 0.74 +1.2 583,330 + Synpcc7942_0595 0.87 +1.6 583,342 + Synpcc7942_0595 0.90 +0.4 583,355 - -0.2 583,423 + +0.2 583,429 + -0.9 583,436 - +1.2 583,436 - +0.2 583,460 + -0.3 583,469 + -0.0 583,548 + +0.8 583,556 - +0.5 583,558 + -0.1 583,590 + Synpcc7942_0596 0.10 +0.7 583,600 + Synpcc7942_0596 0.11 -1.1 583,609 + Synpcc7942_0596 0.12 -1.4 583,611 + Synpcc7942_0596 0.12 -1.1 583,677 - Synpcc7942_0596 0.19 -1.7 583,694 + Synpcc7942_0596 0.21 +0.1 583,741 + Synpcc7942_0596 0.26 +2.2 583,741 + Synpcc7942_0596 0.26 +0.4 583,749 - Synpcc7942_0596 0.27 +0.1 583,765 + Synpcc7942_0596 0.29 -0.4 583,773 - Synpcc7942_0596 0.30 -0.3 583,775 + Synpcc7942_0596 0.30 +0.8 583,781 + Synpcc7942_0596 0.31 -3.0 583,783 - Synpcc7942_0596 0.31 -0.9 583,783 - Synpcc7942_0596 0.31 -0.4 583,898 + Synpcc7942_0596 0.43 -2.3 583,908 - Synpcc7942_0596 0.44 +3.1 583,915 + Synpcc7942_0596 0.45 -0.7 583,918 - Synpcc7942_0596 0.45 +1.0 583,959 + Synpcc7942_0596 0.50 -1.1 583,967 - Synpcc7942_0596 0.50 -0.0 583,967 - Synpcc7942_0596 0.50 +0.7 583,967 - Synpcc7942_0596 0.50 +1.2 583,969 + Synpcc7942_0596 0.51 +0.7 583,970 + Synpcc7942_0596 0.51 +1.2 583,977 - Synpcc7942_0596 0.52 -1.5 583,986 - Synpcc7942_0596 0.53 -0.9 583,996 - Synpcc7942_0596 0.54 -0.8 583,996 - Synpcc7942_0596 0.54 +0.2 584,004 + Synpcc7942_0596 0.54 -1.2 584,037 + Synpcc7942_0596 0.58 +0.2 584,046 - Synpcc7942_0596 0.59 -1.0 584,046 - Synpcc7942_0596 0.59 -0.6 584,059 + Synpcc7942_0596 0.60 -3.1 584,108 + Synpcc7942_0596 0.66 -0.4 584,109 + Synpcc7942_0596 0.66 -1.4 584,136 + Synpcc7942_0596 0.69 +1.7 584,167 - Synpcc7942_0596 0.72 -0.8 584,171 + Synpcc7942_0596 0.72 -0.4 584,189 - Synpcc7942_0596 0.74 -1.2 584,191 + Synpcc7942_0596 0.74 +1.9 584,191 - Synpcc7942_0596 0.74 -1.2 584,208 + Synpcc7942_0596 0.76 -1.4 584,221 + Synpcc7942_0596 0.78 -2.3 584,221 + Synpcc7942_0596 0.78 +3.9 584,221 + Synpcc7942_0596 0.78 -0.2 584,221 + Synpcc7942_0596 0.78 -1.2 584,224 + Synpcc7942_0596 0.78 -0.8 584,249 + Synpcc7942_0596 0.81 -0.8 584,249 + Synpcc7942_0596 0.81 +1.9 584,281 + Synpcc7942_0596 0.84 -0.8 584,282 + Synpcc7942_0596 0.84 +0.7 584,290 - Synpcc7942_0596 0.85 -0.5 584,300 + Synpcc7942_0596 0.86 +3.5 584,309 + Synpcc7942_0596 0.87 -0.4 584,319 + Synpcc7942_0596 0.88 -1.7 584,327 - Synpcc7942_0596 0.89 -0.6 584,329 + Synpcc7942_0596 0.89 -0.6 584,337 - -1.3 584,343 + +0.7 584,348 + +0.7 584,382 + -1.5 584,387 + +0.6
Or see this region's nucleotide sequence