Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00280

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00270 and PGA1_78p00280 are separated by 149 nucleotidesPGA1_78p00280 and PGA1_78p00290 are separated by 78 nucleotides PGA1_78p00270: PGA1_78p00270 - lipoyl synthase LipA, at 32,573 to 33,541 _78p00270 PGA1_78p00280: PGA1_78p00280 - putative sodium/alanine symporter, at 33,691 to 35,067 _78p00280 PGA1_78p00290: PGA1_78p00290 - aminomethyltransferase GcvT, at 35,146 to 36,243 _78p00290 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.155 kb on + strand, within PGA1_78p00270at 33.351 kb on - strand, within PGA1_78p00270at 33.366 kb on + strand, within PGA1_78p00270at 33.374 kb on - strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.434 kb on + strand, within PGA1_78p00270at 33.442 kb on - strand, within PGA1_78p00270at 33.511 kb on + strandat 34.150 kb on + strand, within PGA1_78p00280at 34.197 kb on + strand, within PGA1_78p00280at 34.205 kb on + strand, within PGA1_78p00280at 34.205 kb on - strand, within PGA1_78p00280at 34.409 kb on - strand, within PGA1_78p00280at 34.807 kb on - strand, within PGA1_78p00280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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33,155 + PGA1_78p00270 0.60 -0.8
33,351 - PGA1_78p00270 0.80 -0.5
33,366 + PGA1_78p00270 0.82 +0.8
33,374 - PGA1_78p00270 0.83 -0.5
33,434 + PGA1_78p00270 0.89 +0.9
33,434 + PGA1_78p00270 0.89 +1.0
33,442 - PGA1_78p00270 0.90 +1.2
33,511 + +1.1
34,150 + PGA1_78p00280 0.33 +0.3
34,197 + PGA1_78p00280 0.37 +0.9
34,205 + PGA1_78p00280 0.37 +0.7
34,205 - PGA1_78p00280 0.37 +0.6
34,409 - PGA1_78p00280 0.52 -1.0
34,807 - PGA1_78p00280 0.81 +0.8

Or see this region's nucleotide sequence