Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35950

Experiment: L-Tryptophan (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Tryptophan (N)
3,763,136	+		PGA1_c35940	0.44	+0.7
3,763,158	-		PGA1_c35940	0.46	+1.4
3,763,160	+		PGA1_c35940	0.46	+1.3
3,763,163	-		PGA1_c35940	0.46	+0.5
3,763,169	+		PGA1_c35940	0.46	+0.9
3,763,192	-		PGA1_c35940	0.48	+0.3
3,763,193	-		PGA1_c35940	0.48	+1.0
3,763,193	-		PGA1_c35940	0.48	+0.0
3,763,240	+		PGA1_c35940	0.50	+0.3
3,763,248	-		PGA1_c35940	0.51	-1.1
3,763,250	+		PGA1_c35940	0.51	-0.5
3,763,279	-		PGA1_c35940	0.53	+0.9
3,763,318	+		PGA1_c35940	0.55	+0.5
3,763,414	-		PGA1_c35940	0.61	+1.2
3,763,436	+		PGA1_c35940	0.62	-0.5
3,763,444	-		PGA1_c35940	0.62	+0.8
3,763,446	+		PGA1_c35940	0.63	+0.8
3,763,446	+		PGA1_c35940	0.63	+0.7
3,763,446	+		PGA1_c35940	0.63	+0.8
3,763,446	+		PGA1_c35940	0.63	+2.3
3,763,446	+		PGA1_c35940	0.63	-1.1
3,763,454	-		PGA1_c35940	0.63	-2.1
3,763,454	-		PGA1_c35940	0.63	+0.6
3,763,454	-		PGA1_c35940	0.63	+1.1
3,763,454	-		PGA1_c35940	0.63	+0.5
3,763,518	+		PGA1_c35940	0.67	-1.5
3,763,518	+		PGA1_c35940	0.67	-0.9
3,763,526	-		PGA1_c35940	0.67	+0.8
3,763,541	+		PGA1_c35940	0.68	+1.1
3,763,541	+		PGA1_c35940	0.68	+0.3
3,763,541	-		PGA1_c35940	0.68	+1.5
3,763,549	-		PGA1_c35940	0.69	+0.5
3,763,564	+		PGA1_c35940	0.69	-0.1
3,763,595	-		PGA1_c35940	0.71	-0.1
3,763,612	-		PGA1_c35940	0.72	+0.8
3,763,655	+		PGA1_c35940	0.75	+0.2
3,763,683	+		PGA1_c35940	0.76	+0.4
3,763,727	-		PGA1_c35940	0.79	-0.1
3,763,744	+		PGA1_c35940	0.80	+0.9
3,763,744	+		PGA1_c35940	0.80	+0.0
3,763,752	-		PGA1_c35940	0.81	+0.2
3,763,776	+		PGA1_c35940	0.82	+1.3
3,763,776	+		PGA1_c35940	0.82	+0.8
3,763,782	+		PGA1_c35940	0.82	+1.9
3,763,814	+		PGA1_c35940	0.84	+1.2
3,763,870	+		PGA1_c35940	0.87	+2.0
3,763,876	+		PGA1_c35940	0.88	+0.1
3,763,884	-		PGA1_c35940	0.88	+0.5
3,763,928	-				+0.3
3,763,990	+				+0.3
3,763,993	+				-0.1
3,764,006	-				+0.8
3,764,022	+				-1.1
3,764,058	+				+0.9
3,764,058	+				-0.1
3,764,087	-				-0.8
3,764,092	+				+1.3
3,764,092	+				-0.5
3,764,099	+				-0.5
3,764,168	+				-0.6
3,764,168	+				+0.3
3,764,168	+				+1.6
3,764,168	+				+0.9
3,764,176	-				+0.1
3,764,176	-				+0.5
3,764,180	-				-0.1
3,764,191	+				+0.7
3,764,199	-				+0.3
3,764,229	+				+1.5
3,764,239	+		PGA1_c35950	0.10	+0.7
3,764,239	+		PGA1_c35950	0.10	+0.9
3,764,239	+		PGA1_c35950	0.10	-0.1
3,764,239	+		PGA1_c35950	0.10	+0.7
3,764,239	+		PGA1_c35950	0.10	+1.1
3,764,240	+		PGA1_c35950	0.11	+0.8
3,764,244	+		PGA1_c35950	0.11	+0.1
3,764,247	-		PGA1_c35950	0.11	+0.7
3,764,247	-		PGA1_c35950	0.11	+0.4
3,764,252	-		PGA1_c35950	0.11	+0.2
3,764,303	+		PGA1_c35950	0.15	+1.0
3,764,303	+		PGA1_c35950	0.15	+0.4
3,764,303	+		PGA1_c35950	0.15	+0.8
3,764,303	+		PGA1_c35950	0.15	-0.4
3,764,303	+		PGA1_c35950	0.15	+0.2
3,764,303	+		PGA1_c35950	0.15	+0.5
3,764,303	+		PGA1_c35950	0.15	+0.8
3,764,303	+		PGA1_c35950	0.15	+0.2
3,764,303	+		PGA1_c35950	0.15	-0.2
3,764,305	+		PGA1_c35950	0.15	+0.3
3,764,305	+		PGA1_c35950	0.15	-0.2
3,764,309	+		PGA1_c35950	0.15	+0.0
3,764,311	-		PGA1_c35950	0.16	+0.2
3,764,311	-		PGA1_c35950	0.16	+0.3
3,764,311	-		PGA1_c35950	0.16	+0.5
3,764,311	-		PGA1_c35950	0.16	-1.4
3,764,311	-		PGA1_c35950	0.16	+0.5
3,764,311	-		PGA1_c35950	0.16	+2.0
3,764,316	+		PGA1_c35950	0.16	+0.4
3,764,375	-		PGA1_c35950	0.20	+1.1
3,764,455	+		PGA1_c35950	0.26	+1.0
3,764,510	+		PGA1_c35950	0.29	+0.2
3,764,510	+		PGA1_c35950	0.29	-0.5
3,764,510	+		PGA1_c35950	0.29	+1.9
3,764,510	+		PGA1_c35950	0.29	-1.6
3,764,510	+		PGA1_c35950	0.29	-0.8
3,764,510	+		PGA1_c35950	0.29	+0.7
3,764,518	-		PGA1_c35950	0.30	+0.1
3,764,518	-		PGA1_c35950	0.30	+1.0
3,764,518	-		PGA1_c35950	0.30	+1.2
3,764,518	-		PGA1_c35950	0.30	+0.9
3,764,529	+		PGA1_c35950	0.31	+0.7
3,764,529	+		PGA1_c35950	0.31	-0.8
3,764,529	+		PGA1_c35950	0.31	+0.5
3,764,529	+		PGA1_c35950	0.31	-0.2
3,764,529	+		PGA1_c35950	0.31	+1.0
3,764,529	+		PGA1_c35950	0.31	+0.7
3,764,529	+		PGA1_c35950	0.31	+0.7
3,764,537	-		PGA1_c35950	0.31	+1.1
3,764,537	-		PGA1_c35950	0.31	+0.8
3,764,537	-		PGA1_c35950	0.31	-0.3
3,764,620	-		PGA1_c35950	0.37	+0.6
3,764,634	-		PGA1_c35950	0.38	+0.5
3,764,635	-		PGA1_c35950	0.38	+0.5
3,764,684	+		PGA1_c35950	0.42	+0.4
3,764,696	+		PGA1_c35950	0.42	+1.6
3,764,712	-		PGA1_c35950	0.44	+0.1
3,764,788	-		PGA1_c35950	0.49	-0.2
3,764,788	-		PGA1_c35950	0.49	+0.6
3,764,788	-		PGA1_c35950	0.49	-0.2
3,764,798	-		PGA1_c35950	0.50	+0.6
3,764,798	-		PGA1_c35950	0.50	+0.4
3,764,822	+		PGA1_c35950	0.51	-0.6
3,764,822	+		PGA1_c35950	0.51	+0.5
3,764,830	-		PGA1_c35950	0.52	+0.2
3,764,830	-		PGA1_c35950	0.52	+0.8
3,764,830	-		PGA1_c35950	0.52	-1.1
3,764,830	-		PGA1_c35950	0.52	+0.5
3,764,830	-		PGA1_c35950	0.52	+1.1
3,764,830	-		PGA1_c35950	0.52	+0.7
3,764,834	-		PGA1_c35950	0.52	+1.1
3,764,902	-		PGA1_c35950	0.57	+0.8
3,764,949	+		PGA1_c35950	0.60	+0.1
3,764,951	+		PGA1_c35950	0.60	+1.7
3,765,019	-		PGA1_c35950	0.65	+0.6
3,765,019	-		PGA1_c35950	0.65	+0.0
3,765,030	+		PGA1_c35950	0.66	+0.3
3,765,031	+		PGA1_c35950	0.66	-1.3
3,765,032	+		PGA1_c35950	0.66	+0.8
3,765,032	-		PGA1_c35950	0.66	+0.3
3,765,038	-		PGA1_c35950	0.66	+0.6
3,765,039	-		PGA1_c35950	0.66	+1.1
3,765,131	-		PGA1_c35950	0.73	+1.2
3,765,131	-		PGA1_c35950	0.73	-1.2
3,765,162	-		PGA1_c35950	0.75	-0.5
3,765,167	+		PGA1_c35950	0.75	+0.6
3,765,167	+		PGA1_c35950	0.75	+0.8
3,765,167	-		PGA1_c35950	0.75	+0.5
3,765,168	-		PGA1_c35950	0.75	+0.1
3,765,189	-		PGA1_c35950	0.77	-0.6
3,765,189	-		PGA1_c35950	0.77	+1.3
3,765,250	+		PGA1_c35950	0.81	+0.7
3,765,255	+		PGA1_c35950	0.81	+0.4
3,765,258	-		PGA1_c35950	0.82	+0.0
3,765,258	-		PGA1_c35950	0.82	+0.4
3,765,270	+		PGA1_c35950	0.83	+0.8
3,765,293	+		PGA1_c35950	0.84	+0.7
3,765,311	+		PGA1_c35950	0.85	+0.1
3,765,311	+		PGA1_c35950	0.85	+0.6
3,765,339	-		PGA1_c35950	0.87	+0.0
3,765,346	+		PGA1_c35950	0.88	+0.1
3,765,365	+		PGA1_c35950	0.89	+1.3
3,765,385	+				+0.1
3,765,385	+				-0.0
3,765,385	+				+1.1
3,765,391	-				+0.0
3,765,393	-				+0.9
3,765,432	+				+0.7
3,765,432	+				+0.2
3,765,534	+				+0.1
3,765,546	-				-0.6
3,765,639	+		PGA1_c35960	0.21	-1.1
3,765,647	-		PGA1_c35960	0.23	-1.0
3,765,647	-		PGA1_c35960	0.23	+0.3
3,765,662	+		PGA1_c35960	0.26	+0.0
3,765,662	+		PGA1_c35960	0.26	-1.9
3,765,662	+		PGA1_c35960	0.26	-1.2
3,765,670	-		PGA1_c35960	0.28	+0.4
3,765,784	-		PGA1_c35960	0.52	-1.7
3,765,787	+		PGA1_c35960	0.53	-1.0
3,765,790	-		PGA1_c35960	0.54	-0.9
3,765,795	-		PGA1_c35960	0.55	-1.3
3,765,795	-		PGA1_c35960	0.55	-0.8
3,765,811	+		PGA1_c35960	0.58	-1.5
3,765,811	+		PGA1_c35960	0.58	-1.1
3,765,816	+		PGA1_c35960	0.59	-2.0
3,765,824	-		PGA1_c35960	0.61	-1.7
3,765,824	-		PGA1_c35960	0.61	-1.4
3,765,839	-		PGA1_c35960	0.64	-1.4
3,765,843	+		PGA1_c35960	0.65	-1.9
3,765,903	-		PGA1_c35960	0.78	-0.3
3,765,974	+				-3.1
3,765,982	-				-0.2
3,766,033	-				+1.4
3,766,096	+				-1.2
3,766,127	+		PGA1_c35970	0.14	+0.8
3,766,168	-		PGA1_c35970	0.21	-0.6
3,766,171	+		PGA1_c35970	0.22	-1.1
3,766,236	+		PGA1_c35970	0.33	+0.2
3,766,256	-		PGA1_c35970	0.37	-0.2
3,766,266	-		PGA1_c35970	0.38	+1.3
3,766,266	-		PGA1_c35970	0.38	-0.4
3,766,266	-		PGA1_c35970	0.38	+0.9
3,766,266	-		PGA1_c35970	0.38	+0.7
3,766,270	+		PGA1_c35970	0.39	+0.6
3,766,271	+		PGA1_c35970	0.39	-0.1
3,766,310	-		PGA1_c35970	0.46	-1.1
3,766,316	-		PGA1_c35970	0.47	+0.5
3,766,427	+		PGA1_c35970	0.67	-1.0
3,766,427	+		PGA1_c35970	0.67	-0.5
3,766,427	+		PGA1_c35970	0.67	-0.9
3,766,427	+		PGA1_c35970	0.67	-0.2
3,766,434	+		PGA1_c35970	0.68	+0.8
3,766,435	-		PGA1_c35970	0.68	+0.0
3,766,435	-		PGA1_c35970	0.68	+1.1
3,766,442	-		PGA1_c35970	0.70	-1.4
3,766,442	-		PGA1_c35970	0.70	-0.3
3,766,498	-		PGA1_c35970	0.80	-0.0
3,766,507	-		PGA1_c35970	0.81	+0.6