Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31190 and PGA1_c31200 are separated by 70 nucleotides PGA1_c31200 and PGA1_c31210 overlap by 4 nucleotides PGA1_c31210 and PGA1_c31220 overlap by 1 nucleotides
PGA1_c31190: PGA1_c31190 - histidinol dehydrogenase HisD, at 3,255,459 to 3,256,760
_c31190
PGA1_c31200: PGA1_c31200 - putative acetyltransferase, at 3,256,831 to 3,257,373
_c31200
PGA1_c31210: PGA1_c31210 - Protein of unknown function (DUF2948)., at 3,257,370 to 3,257,846
_c31210
PGA1_c31220: PGA1_c31220 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA, at 3,257,846 to 3,259,117
_c31220
Position (kb)
3257
3258 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3256.789 kb on - strand at 3256.792 kb on - strand at 3256.803 kb on + strand at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.888 kb on - strand, within PGA1_c31200 at 3256.927 kb on + strand, within PGA1_c31200 at 3256.940 kb on + strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.948 kb on - strand, within PGA1_c31200 at 3256.953 kb on + strand, within PGA1_c31200 at 3256.986 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.078 kb on + strand, within PGA1_c31200 at 3257.090 kb on + strand, within PGA1_c31200 at 3257.130 kb on + strand, within PGA1_c31200 at 3257.148 kb on - strand, within PGA1_c31200 at 3257.156 kb on + strand, within PGA1_c31200 at 3257.164 kb on - strand, within PGA1_c31200 at 3257.175 kb on + strand, within PGA1_c31200 at 3257.198 kb on + strand, within PGA1_c31200 at 3257.222 kb on - strand, within PGA1_c31200 at 3257.242 kb on - strand, within PGA1_c31200 at 3257.271 kb on + strand, within PGA1_c31200 at 3257.279 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.432 kb on + strand, within PGA1_c31210 at 3257.484 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.569 kb on - strand, within PGA1_c31210 at 3257.625 kb on - strand, within PGA1_c31210 at 3257.681 kb on + strand, within PGA1_c31210 at 3257.786 kb on + strand, within PGA1_c31210 at 3257.793 kb on - strand, within PGA1_c31210 at 3257.850 kb on - strand at 3257.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,256,789 - +0.2 3,256,792 - -1.2 3,256,803 + -1.8 3,256,880 + -0.7 3,256,880 + -0.2 3,256,880 + +0.8 3,256,888 - PGA1_c31200 0.10 -0.5 3,256,927 + PGA1_c31200 0.18 +0.1 3,256,940 + PGA1_c31200 0.20 +1.0 3,256,940 - PGA1_c31200 0.20 -0.4 3,256,940 - PGA1_c31200 0.20 -0.4 3,256,948 - PGA1_c31200 0.22 +0.2 3,256,953 + PGA1_c31200 0.22 +0.5 3,256,986 + PGA1_c31200 0.29 +1.2 3,257,031 + PGA1_c31200 0.37 +1.3 3,257,031 + PGA1_c31200 0.37 -0.2 3,257,039 - PGA1_c31200 0.38 -1.0 3,257,039 - PGA1_c31200 0.38 +0.7 3,257,039 - PGA1_c31200 0.38 -0.1 3,257,039 - PGA1_c31200 0.38 +0.8 3,257,039 - PGA1_c31200 0.38 +0.4 3,257,039 - PGA1_c31200 0.38 +0.6 3,257,039 - PGA1_c31200 0.38 +0.4 3,257,057 + PGA1_c31200 0.42 +1.1 3,257,057 + PGA1_c31200 0.42 -0.0 3,257,057 + PGA1_c31200 0.42 -0.6 3,257,057 + PGA1_c31200 0.42 -0.2 3,257,057 + PGA1_c31200 0.42 -0.1 3,257,057 + PGA1_c31200 0.42 -1.0 3,257,057 + PGA1_c31200 0.42 -1.3 3,257,057 + PGA1_c31200 0.42 +2.1 3,257,065 - PGA1_c31200 0.43 -1.1 3,257,065 - PGA1_c31200 0.43 -0.5 3,257,065 - PGA1_c31200 0.43 -0.6 3,257,078 + PGA1_c31200 0.45 +0.4 3,257,090 + PGA1_c31200 0.48 -2.0 3,257,130 + PGA1_c31200 0.55 -0.7 3,257,148 - PGA1_c31200 0.58 -0.1 3,257,156 + PGA1_c31200 0.60 -0.9 3,257,164 - PGA1_c31200 0.61 -0.7 3,257,175 + PGA1_c31200 0.63 -1.8 3,257,198 + PGA1_c31200 0.68 +0.5 3,257,222 - PGA1_c31200 0.72 -0.7 3,257,242 - PGA1_c31200 0.76 -0.4 3,257,271 + PGA1_c31200 0.81 -1.5 3,257,279 - PGA1_c31200 0.83 -0.5 3,257,313 - PGA1_c31200 0.89 -0.3 3,257,313 - PGA1_c31200 0.89 +0.9 3,257,432 + PGA1_c31210 0.13 +0.3 3,257,484 + PGA1_c31210 0.24 -2.0 3,257,519 + PGA1_c31210 0.31 +0.1 3,257,519 + PGA1_c31210 0.31 -0.1 3,257,519 + PGA1_c31210 0.31 +0.5 3,257,569 - PGA1_c31210 0.42 +1.4 3,257,625 - PGA1_c31210 0.53 +0.1 3,257,681 + PGA1_c31210 0.65 +0.9 3,257,786 + PGA1_c31210 0.87 +0.6 3,257,793 - PGA1_c31210 0.89 +0.2 3,257,850 - +1.0 3,257,870 - +1.2
Or see this region's nucleotide sequence