Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15310

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15300 and PGA1_c15310 are separated by 148 nucleotidesPGA1_c15310 and PGA1_c15320 are separated by 60 nucleotides PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219 _c15300 PGA1_c15310: PGA1_c15310 - multidrug transporter EmrE, at 1,596,368 to 1,596,703 _c15310 PGA1_c15320: PGA1_c15320 - Predicted hydrolases of HD superfamily, at 1,596,764 to 1,597,936 _c15320 Position (kb) 1596 1597Strain fitness (log2 ratio) -1 0 1at 1595.505 kb on - strand, within PGA1_c15300at 1595.523 kb on + strand, within PGA1_c15300at 1595.523 kb on + strand, within PGA1_c15300at 1595.531 kb on - strand, within PGA1_c15300at 1595.737 kb on - strand, within PGA1_c15300at 1595.739 kb on - strand, within PGA1_c15300at 1596.019 kb on - strand, within PGA1_c15300at 1596.123 kb on - strandat 1596.221 kb on - strandat 1596.316 kb on + strandat 1596.316 kb on + strandat 1596.319 kb on - strandat 1596.352 kb on + strandat 1596.352 kb on + strandat 1596.352 kb on + strandat 1596.358 kb on - strandat 1596.358 kb on - strandat 1596.360 kb on - strandat 1596.381 kb on - strandat 1596.383 kb on - strandat 1596.431 kb on + strand, within PGA1_c15310at 1596.537 kb on + strand, within PGA1_c15310at 1596.577 kb on + strand, within PGA1_c15310at 1596.585 kb on - strand, within PGA1_c15310at 1596.607 kb on + strand, within PGA1_c15310at 1596.615 kb on - strand, within PGA1_c15310at 1596.682 kb on + strandat 1596.704 kb on + strandat 1596.704 kb on + strandat 1596.712 kb on - strandat 1596.712 kb on - strandat 1596.762 kb on + strandat 1596.770 kb on - strandat 1596.815 kb on + strandat 1596.975 kb on - strand, within PGA1_c15320at 1597.095 kb on + strand, within PGA1_c15320at 1597.156 kb on + strand, within PGA1_c15320at 1597.164 kb on - strand, within PGA1_c15320at 1597.197 kb on + strand, within PGA1_c15320at 1597.197 kb on + strand, within PGA1_c15320at 1597.200 kb on - strand, within PGA1_c15320at 1597.205 kb on - strand, within PGA1_c15320at 1597.321 kb on + strand, within PGA1_c15320at 1597.368 kb on + strand, within PGA1_c15320at 1597.391 kb on + strand, within PGA1_c15320at 1597.398 kb on + strand, within PGA1_c15320at 1597.399 kb on - strand, within PGA1_c15320at 1597.437 kb on + strand, within PGA1_c15320at 1597.437 kb on + strand, within PGA1_c15320at 1597.437 kb on + strand, within PGA1_c15320at 1597.445 kb on - strand, within PGA1_c15320at 1597.535 kb on - strand, within PGA1_c15320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,595,505 - PGA1_c15300 0.61 -0.6
1,595,523 + PGA1_c15300 0.62 -0.7
1,595,523 + PGA1_c15300 0.62 +0.1
1,595,531 - PGA1_c15300 0.62 +0.2
1,595,737 - PGA1_c15300 0.73 +0.5
1,595,739 - PGA1_c15300 0.74 -0.5
1,596,019 - PGA1_c15300 0.89 -0.5
1,596,123 - +0.8
1,596,221 - -0.2
1,596,316 + -0.6
1,596,316 + -0.0
1,596,319 - +0.3
1,596,352 + -0.3
1,596,352 + +0.5
1,596,352 + +1.4
1,596,358 - -0.1
1,596,358 - -0.1
1,596,360 - +0.0
1,596,381 - +1.5
1,596,383 - -0.7
1,596,431 + PGA1_c15310 0.19 +0.5
1,596,537 + PGA1_c15310 0.50 +1.4
1,596,577 + PGA1_c15310 0.62 +0.6
1,596,585 - PGA1_c15310 0.65 +0.4
1,596,607 + PGA1_c15310 0.71 -0.2
1,596,615 - PGA1_c15310 0.74 -0.5
1,596,682 + +0.0
1,596,704 + +0.5
1,596,704 + +0.8
1,596,712 - -0.1
1,596,712 - +0.5
1,596,762 + -1.0
1,596,770 - +0.2
1,596,815 + +0.0
1,596,975 - PGA1_c15320 0.18 -0.5
1,597,095 + PGA1_c15320 0.28 -0.0
1,597,156 + PGA1_c15320 0.33 +1.5
1,597,164 - PGA1_c15320 0.34 -1.1
1,597,197 + PGA1_c15320 0.37 -0.1
1,597,197 + PGA1_c15320 0.37 +0.9
1,597,200 - PGA1_c15320 0.37 +1.5
1,597,205 - PGA1_c15320 0.38 -0.4
1,597,321 + PGA1_c15320 0.47 -0.8
1,597,368 + PGA1_c15320 0.51 -0.3
1,597,391 + PGA1_c15320 0.53 +1.5
1,597,398 + PGA1_c15320 0.54 +0.8
1,597,399 - PGA1_c15320 0.54 +0.2
1,597,437 + PGA1_c15320 0.57 -0.0
1,597,437 + PGA1_c15320 0.57 +0.9
1,597,437 + PGA1_c15320 0.57 +0.1
1,597,445 - PGA1_c15320 0.58 -0.5
1,597,535 - PGA1_c15320 0.66 +0.3

Or see this region's nucleotide sequence