Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23035 and BWI76_RS23040 overlap by 4 nucleotides BWI76_RS23040 and BWI76_RS23045 are separated by 10 nucleotides BWI76_RS23045 and BWI76_RS23050 overlap by 4 nucleotides BWI76_RS23050 and BWI76_RS23055 overlap by 1 nucleotides
BWI76_RS23035: BWI76_RS23035 - precorrin-2 C(20)-methyltransferase, at 4,804,540 to 4,805,253
_RS23035
BWI76_RS23040: BWI76_RS23040 - sirohydrochlorin cobaltochelatase, at 4,805,250 to 4,806,044
_RS23040
BWI76_RS23045: BWI76_RS23045 - cobalt-precorrin-6A/precorrin-6x reductase, at 4,806,055 to 4,806,834
_RS23045
BWI76_RS23050: BWI76_RS23050 - cobalt-precorrin-3B C(17)-methyltransferase, at 4,806,831 to 4,807,556
_RS23050
BWI76_RS23055: BWI76_RS23055 - cobalamin biosynthesis protein CbiG, at 4,807,556 to 4,808,611
_RS23055
Position (kb) 4806
4807 Strain fitness (log2 ratio) -2
-1
0
1 at 4805.376 kb on - strand, within BWI76_RS23040 at 4805.517 kb on + strand, within BWI76_RS23040 at 4805.547 kb on + strand, within BWI76_RS23040 at 4805.728 kb on - strand, within BWI76_RS23040 at 4805.730 kb on + strand, within BWI76_RS23040 at 4805.756 kb on - strand, within BWI76_RS23040 at 4805.863 kb on + strand, within BWI76_RS23040 at 4805.888 kb on + strand, within BWI76_RS23040 at 4806.162 kb on + strand, within BWI76_RS23045 at 4806.304 kb on + strand, within BWI76_RS23045 at 4806.449 kb on + strand, within BWI76_RS23045 at 4806.477 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.494 kb on + strand, within BWI76_RS23045 at 4806.523 kb on + strand, within BWI76_RS23045 at 4806.613 kb on - strand, within BWI76_RS23045 at 4806.836 kb on + strand at 4806.846 kb on - strand at 4806.992 kb on - strand, within BWI76_RS23050 at 4807.031 kb on + strand, within BWI76_RS23050 at 4807.031 kb on + strand, within BWI76_RS23050 at 4807.609 kb on - strand at 4807.785 kb on - strand, within BWI76_RS23055
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 4,805,376 - BWI76_RS23040 0.16 -0.2 4,805,517 + BWI76_RS23040 0.34 -0.2 4,805,547 + BWI76_RS23040 0.37 -0.5 4,805,728 - BWI76_RS23040 0.60 +0.3 4,805,730 + BWI76_RS23040 0.60 +0.2 4,805,756 - BWI76_RS23040 0.64 +1.3 4,805,863 + BWI76_RS23040 0.77 -0.0 4,805,888 + BWI76_RS23040 0.80 +0.7 4,806,162 + BWI76_RS23045 0.14 -0.2 4,806,304 + BWI76_RS23045 0.32 +0.1 4,806,449 + BWI76_RS23045 0.51 +0.0 4,806,477 + BWI76_RS23045 0.54 +0.3 4,806,494 + BWI76_RS23045 0.56 +0.7 4,806,494 + BWI76_RS23045 0.56 -0.2 4,806,494 + BWI76_RS23045 0.56 +0.6 4,806,494 + BWI76_RS23045 0.56 -0.3 4,806,494 + BWI76_RS23045 0.56 +0.5 4,806,494 + BWI76_RS23045 0.56 +0.1 4,806,523 + BWI76_RS23045 0.60 +0.4 4,806,613 - BWI76_RS23045 0.72 -1.0 4,806,836 + -0.1 4,806,846 - -1.2 4,806,992 - BWI76_RS23050 0.22 -1.4 4,807,031 + BWI76_RS23050 0.28 +0.4 4,807,031 + BWI76_RS23050 0.28 -0.7 4,807,609 - -0.9 4,807,785 - BWI76_RS23055 0.22 -2.5
Or see this region's nucleotide sequence