Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Leu-6

Experiment: MoLS4 with Spermidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2576 and DVU2577 are separated by 94 nucleotidesDVU2577 and tRNA-Leu are separated by 131 nucleotidestRNA-Leu and DVU2578 are separated by 108 nucleotides DVU2576: DVU2576 - oligopeptide ABC transporter, ATP-binding protein (TIGR), at 2,689,296 to 2,690,261 DVU2576 DVU2577: DVU2577 - DNA-binding response regulator, LuxR family (TIGR), at 2,690,356 to 2,691,006 DVU2577 DVU_tRNA-Leu-6: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 2,691,138 to 2,691,224 tRNA-Leu DVU2578: DVU2578 - response regulator (TIGR), at 2,691,333 to 2,692,022 DVU2578 Position (kb) 2691 2692Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2690.145 kb on + strand, within DVU2576at 2690.310 kb on - strandat 2690.343 kb on - strandat 2690.358 kb on + strandat 2690.414 kb on - strandat 2690.418 kb on + strandat 2690.455 kb on + strand, within DVU2577at 2690.520 kb on + strand, within DVU2577at 2690.535 kb on - strand, within DVU2577at 2690.648 kb on + strand, within DVU2577at 2690.650 kb on - strand, within DVU2577at 2690.699 kb on - strand, within DVU2577at 2690.921 kb on - strand, within DVU2577at 2691.032 kb on + strandat 2691.244 kb on - strandat 2691.297 kb on - strandat 2691.509 kb on + strand, within DVU2578at 2691.560 kb on - strand, within DVU2578at 2691.596 kb on - strand, within DVU2578at 2691.684 kb on - strand, within DVU2578at 2691.707 kb on + strand, within DVU2578at 2691.715 kb on - strand, within DVU2578at 2691.734 kb on - strand, within DVU2578at 2691.758 kb on + strand, within DVU2578at 2691.792 kb on - strand, within DVU2578at 2691.802 kb on + strand, within DVU2578at 2692.073 kb on + strandat 2692.073 kb on + strandat 2692.073 kb on + strandat 2692.081 kb on - strandat 2692.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N)
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2,690,145 + DVU2576 0.88 -0.2
2,690,310 - +2.1
2,690,343 - -1.0
2,690,358 + +1.4
2,690,414 - +1.7
2,690,418 + +2.4
2,690,455 + DVU2577 0.15 +3.0
2,690,520 + DVU2577 0.25 +2.1
2,690,535 - DVU2577 0.27 +2.1
2,690,648 + DVU2577 0.45 -0.9
2,690,650 - DVU2577 0.45 +1.9
2,690,699 - DVU2577 0.53 +2.0
2,690,921 - DVU2577 0.87 +2.0
2,691,032 + +1.0
2,691,244 - +0.0
2,691,297 - -0.2
2,691,509 + DVU2578 0.26 +1.6
2,691,560 - DVU2578 0.33 +1.4
2,691,596 - DVU2578 0.38 +1.8
2,691,684 - DVU2578 0.51 +1.3
2,691,707 + DVU2578 0.54 +2.1
2,691,715 - DVU2578 0.55 -2.2
2,691,734 - DVU2578 0.58 +0.7
2,691,758 + DVU2578 0.62 +1.9
2,691,792 - DVU2578 0.67 +1.7
2,691,802 + DVU2578 0.68 +1.8
2,692,073 + -0.3
2,692,073 + -0.2
2,692,073 + -1.9
2,692,081 - +0.9
2,692,170 + -0.2

Or see this region's nucleotide sequence