Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0342

Experiment: MoLS4 with Spermidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdsB and DVU0342 are separated by 312 nucleotidesDVU0342 and DVU0343 are separated by 2 nucleotides DVU0341: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (TIGR), at 386,419 to 387,189 kdsB DVU0342: DVU0342 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 387,502 to 388,416 DVU0342 DVU0343: DVU0343 - HPCH/HPAI aldolase family protein (TIGR), at 388,419 to 389,201 DVU0343 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1at 387.217 kb on + strandat 387.217 kb on + strandat 387.253 kb on - strandat 387.311 kb on - strandat 387.334 kb on - strandat 387.426 kb on - strandat 387.520 kb on - strandat 387.528 kb on + strandat 387.551 kb on - strandat 388.430 kb on - strandat 388.439 kb on + strandat 389.304 kb on - strandat 389.315 kb on + strandat 389.320 kb on + strandat 389.328 kb on - strandat 389.359 kb on + strandat 389.361 kb on + strandat 389.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N)
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387,217 + +0.5
387,217 + -0.1
387,253 - -0.4
387,311 - -0.0
387,334 - +0.1
387,426 - -0.1
387,520 - -3.4
387,528 + -0.4
387,551 - -0.4
388,430 - +0.0
388,439 + +1.2
389,304 - -0.9
389,315 + -0.6
389,320 + -0.3
389,328 - -2.6
389,359 + -0.7
389,361 + -0.5
389,367 - +0.4

Or see this region's nucleotide sequence