Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0277

Experiment: MoLS4 with Spermidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0276 and DORF26828 are separated by 147 nucleotidesDORF26828 and DVU0277 are separated by 176 nucleotidesDVU0277 and DVU0278 are separated by 293 nucleotides DVU0276: DVU0276 - conserved hypothetical protein (TIGR), at 319,404 to 319,802 DVU0276 DORF26828: DORF26828 - SEED: FIG00605560: hypothetical protein, at 319,950 to 320,180 DORF26828 DVU0277: DVU0277 - transcriptional regulator, AraC family (TIGR), at 320,357 to 321,337 DVU0277 DVU0278: DVU0278 - glyoxalase family protein (TIGR), at 321,631 to 322,053 DVU0278 Position (kb) 320 321 322Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 319.364 kb on + strandat 319.394 kb on - strandat 319.401 kb on + strandat 319.411 kb on + strandat 319.411 kb on + strandat 319.419 kb on - strandat 319.458 kb on - strand, within DVU0276at 319.474 kb on - strand, within DVU0276at 319.476 kb on + strand, within DVU0276at 319.553 kb on + strand, within DVU0276at 319.563 kb on + strand, within DVU0276at 319.568 kb on + strand, within DVU0276at 319.583 kb on - strand, within DVU0276at 319.587 kb on + strand, within DVU0276at 319.595 kb on - strand, within DVU0276at 319.605 kb on - strand, within DVU0276at 319.619 kb on + strand, within DVU0276at 319.640 kb on - strand, within DVU0276at 319.658 kb on + strand, within DVU0276at 319.658 kb on + strand, within DVU0276at 319.697 kb on - strand, within DVU0276at 319.711 kb on + strand, within DVU0276at 319.715 kb on + strand, within DVU0276at 319.723 kb on - strand, within DVU0276at 319.723 kb on - strand, within DVU0276at 319.734 kb on + strand, within DVU0276at 319.734 kb on + strand, within DVU0276at 319.743 kb on - strand, within DVU0276at 319.779 kb on + strandat 319.787 kb on - strandat 319.787 kb on - strandat 319.789 kb on - strandat 319.843 kb on + strandat 319.843 kb on + strandat 319.848 kb on + strandat 319.856 kb on - strandat 319.856 kb on - strandat 320.024 kb on - strand, within DORF26828at 320.026 kb on + strand, within DORF26828at 320.034 kb on - strand, within DORF26828at 320.051 kb on + strand, within DORF26828at 320.115 kb on - strand, within DORF26828at 320.209 kb on - strandat 320.245 kb on - strandat 320.245 kb on - strandat 320.304 kb on - strandat 320.341 kb on + strandat 320.346 kb on - strandat 320.375 kb on - strandat 320.465 kb on + strand, within DVU0277at 320.505 kb on + strand, within DVU0277at 320.516 kb on + strand, within DVU0277at 320.524 kb on - strand, within DVU0277at 320.524 kb on - strand, within DVU0277at 320.711 kb on - strand, within DVU0277at 320.719 kb on + strand, within DVU0277at 320.722 kb on + strand, within DVU0277at 320.780 kb on + strand, within DVU0277at 320.783 kb on - strand, within DVU0277at 320.900 kb on - strand, within DVU0277at 320.923 kb on + strand, within DVU0277at 320.931 kb on - strand, within DVU0277at 320.959 kb on - strand, within DVU0277at 320.961 kb on + strand, within DVU0277at 320.969 kb on - strand, within DVU0277at 320.979 kb on + strand, within DVU0277at 321.033 kb on + strand, within DVU0277at 321.033 kb on + strand, within DVU0277at 321.056 kb on - strand, within DVU0277at 321.101 kb on - strand, within DVU0277at 321.117 kb on - strand, within DVU0277at 321.135 kb on - strand, within DVU0277at 321.146 kb on + strand, within DVU0277at 321.260 kb on - strandat 321.262 kb on + strandat 321.292 kb on - strandat 321.361 kb on + strandat 321.369 kb on + strandat 321.441 kb on + strandat 321.497 kb on - strandat 321.570 kb on + strandat 321.674 kb on - strand, within DVU0278at 321.767 kb on - strand, within DVU0278at 321.807 kb on - strand, within DVU0278at 321.837 kb on + strand, within DVU0278at 321.837 kb on + strand, within DVU0278at 321.842 kb on + strand, within DVU0278at 321.845 kb on - strand, within DVU0278at 321.907 kb on - strand, within DVU0278at 321.909 kb on + strand, within DVU0278at 321.909 kb on + strand, within DVU0278at 321.915 kb on + strand, within DVU0278at 321.948 kb on - strand, within DVU0278at 321.970 kb on + strand, within DVU0278at 322.011 kb on + strandat 322.059 kb on + strandat 322.067 kb on - strandat 322.067 kb on - strandat 322.074 kb on + strandat 322.082 kb on + strandat 322.107 kb on - strandat 322.138 kb on + strandat 322.146 kb on - strandat 322.323 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N)
remove
319,364 + -0.1
319,394 - -0.8
319,401 + -0.4
319,411 + -0.2
319,411 + -0.4
319,419 - +0.2
319,458 - DVU0276 0.14 +0.7
319,474 - DVU0276 0.18 +0.3
319,476 + DVU0276 0.18 +1.2
319,553 + DVU0276 0.37 -0.3
319,563 + DVU0276 0.40 -1.1
319,568 + DVU0276 0.41 -0.2
319,583 - DVU0276 0.45 -0.1
319,587 + DVU0276 0.46 -0.4
319,595 - DVU0276 0.48 +0.2
319,605 - DVU0276 0.50 -0.3
319,619 + DVU0276 0.54 -0.4
319,640 - DVU0276 0.59 +0.3
319,658 + DVU0276 0.64 +0.3
319,658 + DVU0276 0.64 +0.1
319,697 - DVU0276 0.73 -0.4
319,711 + DVU0276 0.77 +0.1
319,715 + DVU0276 0.78 +0.6
319,723 - DVU0276 0.80 -2.4
319,723 - DVU0276 0.80 -0.8
319,734 + DVU0276 0.83 +0.0
319,734 + DVU0276 0.83 +0.1
319,743 - DVU0276 0.85 +0.2
319,779 + -0.2
319,787 - +0.0
319,787 - +1.4
319,789 - +0.3
319,843 + -0.6
319,843 + +0.3
319,848 + -0.8
319,856 - -1.1
319,856 - -0.2
320,024 - DORF26828 0.32 +0.2
320,026 + DORF26828 0.33 -0.4
320,034 - DORF26828 0.36 -0.4
320,051 + DORF26828 0.44 +0.5
320,115 - DORF26828 0.71 -1.7
320,209 - -1.1
320,245 - -0.0
320,245 - -0.4
320,304 - -1.5
320,341 + +0.0
320,346 - -0.8
320,375 - +0.4
320,465 + DVU0277 0.11 -0.3
320,505 + DVU0277 0.15 -2.3
320,516 + DVU0277 0.16 -0.3
320,524 - DVU0277 0.17 +0.2
320,524 - DVU0277 0.17 +0.0
320,711 - DVU0277 0.36 +0.7
320,719 + DVU0277 0.37 +0.2
320,722 + DVU0277 0.37 -2.9
320,780 + DVU0277 0.43 -0.1
320,783 - DVU0277 0.43 -0.1
320,900 - DVU0277 0.55 +0.4
320,923 + DVU0277 0.58 +0.3
320,931 - DVU0277 0.59 -1.7
320,959 - DVU0277 0.61 -1.7
320,961 + DVU0277 0.62 -0.3
320,969 - DVU0277 0.62 +0.1
320,979 + DVU0277 0.63 -2.1
321,033 + DVU0277 0.69 -2.0
321,033 + DVU0277 0.69 -0.8
321,056 - DVU0277 0.71 -0.8
321,101 - DVU0277 0.76 -0.3
321,117 - DVU0277 0.77 -1.0
321,135 - DVU0277 0.79 -0.1
321,146 + DVU0277 0.80 -2.0
321,260 - -0.2
321,262 + -0.3
321,292 - -1.3
321,361 + +0.2
321,369 + -0.5
321,441 + -2.2
321,497 - -0.4
321,570 + -1.3
321,674 - DVU0278 0.10 +0.4
321,767 - DVU0278 0.32 -1.0
321,807 - DVU0278 0.42 -0.1
321,837 + DVU0278 0.49 +0.1
321,837 + DVU0278 0.49 +0.7
321,842 + DVU0278 0.50 -0.1
321,845 - DVU0278 0.51 +0.1
321,907 - DVU0278 0.65 -1.1
321,909 + DVU0278 0.66 +0.4
321,909 + DVU0278 0.66 +0.3
321,915 + DVU0278 0.67 -1.0
321,948 - DVU0278 0.75 -0.0
321,970 + DVU0278 0.80 +0.0
322,011 + +0.4
322,059 + -1.1
322,067 - -4.3
322,067 - -0.1
322,074 + -2.8
322,082 + +0.1
322,107 - +0.9
322,138 + -1.2
322,146 - -1.0
322,323 + +0.1

Or see this region's nucleotide sequence