Experiment: MoLS4 with Spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF24435 and DVU3347 are separated by 312 nucleotides DVU3347 and DVU3348 overlap by 1 nucleotides DVU3348 and DVU3349 overlap by 1 nucleotides
DORF24435: DORF24435 - SEED: Sll1863 protein, at 3,518,663 to 3,518,953
DORF24435
DVU3347: DVU3347 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 3,519,266 to 3,519,814
DVU3347
DVU3348: DVU3348 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR), at 3,519,814 to 3,520,596
DVU3348
DVU3349: DVU3349 - pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein (TIGR), at 3,520,596 to 3,521,669
DVU3349
Position (kb)
3519
3520
3521 Strain fitness (log2 ratio)
-2
-1
0
1 at 3518.853 kb on + strand, within DORF24435 at 3518.853 kb on + strand, within DORF24435 at 3518.982 kb on - strand at 3519.057 kb on - strand at 3519.107 kb on + strand at 3519.129 kb on + strand at 3519.191 kb on - strand at 3519.225 kb on - strand at 3519.249 kb on + strand at 3519.249 kb on + strand at 3519.257 kb on - strand at 3519.257 kb on - strand at 3519.561 kb on + strand, within DVU3347 at 3519.842 kb on + strand at 3519.850 kb on - strand at 3520.022 kb on + strand, within DVU3348 at 3520.250 kb on + strand, within DVU3348 at 3520.310 kb on + strand, within DVU3348 at 3520.932 kb on - strand, within DVU3349 at 3520.947 kb on - strand, within DVU3349 at 3521.403 kb on - strand, within DVU3349
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N) remove 3,518,853 + DORF24435 0.65 +0.2 3,518,853 + DORF24435 0.65 +0.2 3,518,982 - -0.1 3,519,057 - -0.0 3,519,107 + +0.3 3,519,129 + -0.9 3,519,191 - -0.0 3,519,225 - +0.1 3,519,249 + -0.3 3,519,249 + -0.4 3,519,257 - -1.0 3,519,257 - -0.1 3,519,561 + DVU3347 0.54 -0.4 3,519,842 + -0.9 3,519,850 - -1.1 3,520,022 + DVU3348 0.27 -1.6 3,520,250 + DVU3348 0.56 -2.7 3,520,310 + DVU3348 0.63 -1.4 3,520,932 - DVU3349 0.31 -2.0 3,520,947 - DVU3349 0.33 -0.9 3,521,403 - DVU3349 0.75 -2.0
Or see this region's nucleotide sequence