Experiment: MoLS4 with Spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1663 and DVU1664 are separated by 118 nucleotides DVU1664 and aroQ are separated by 144 nucleotides aroQ and efp are separated by 40 nucleotides efp and ftsK are separated by 129 nucleotides
DVU1663: DVU1663 - permease, putative (TIGR), at 1,742,710 to 1,743,792
DVU1663
DVU1664: DVU1664 - GTP-binding protein (TIGR), at 1,743,911 to 1,744,561
DVU1664
DVU1665: aroQ - 3-dehydroquinate dehydratase, type II (TIGR), at 1,744,706 to 1,745,173
aroQ
DVU1666: efp - translation elongation factor P (TIGR), at 1,745,214 to 1,745,771
efp
DVU1667: ftsK - FtsK/SpoIIIE family protein (TIGR), at 1,745,901 to 1,748,231
ftsK
Position (kb)
1744
1745
1746 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1743.855 kb on + strand at 1744.640 kb on - strand at 1744.675 kb on - strand at 1745.241 kb on + strand at 1745.256 kb on - strand at 1745.322 kb on - strand, within efp at 1745.465 kb on + strand, within efp at 1745.502 kb on - strand, within efp at 1745.525 kb on + strand, within efp at 1745.579 kb on - strand, within efp at 1745.620 kb on - strand, within efp at 1745.636 kb on + strand, within efp at 1745.636 kb on + strand, within efp at 1745.644 kb on - strand, within efp at 1745.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N) remove 1,743,855 + -2.4 1,744,640 - -0.2 1,744,675 - -0.9 1,745,241 + -2.5 1,745,256 - -1.8 1,745,322 - efp DVU1666 0.19 -2.9 1,745,465 + efp DVU1666 0.45 -1.5 1,745,502 - efp DVU1666 0.52 -0.4 1,745,525 + efp DVU1666 0.56 -1.3 1,745,579 - efp DVU1666 0.65 -0.9 1,745,620 - efp DVU1666 0.73 -2.8 1,745,636 + efp DVU1666 0.76 -0.6 1,745,636 + efp DVU1666 0.76 -2.2 1,745,644 - efp DVU1666 0.77 -2.1 1,745,809 + -0.5
Or see this region's nucleotide sequence