Experiment: MoLS4 with Spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paaK-1 and DORF5594 are separated by 689 nucleotides DORF5594 and DVU0491 are separated by 334 nucleotides
DVU0489: paaK-1 - phenylacetate-coenzyme A ligase (TIGR), at 556,585 to 557,883
paaK-1
DORF5594: DORF5594 - SEED: Predicted signal transduction protein, at 558,573 to 559,487
DORF5594
DVU0491: DVU0491 - HDIG domain protein (TIGR), at 559,822 to 561,027
DVU0491
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1 at 557.595 kb on + strand, within paaK-1 at 557.595 kb on + strand, within paaK-1 at 557.603 kb on - strand, within paaK-1 at 557.688 kb on + strand, within paaK-1 at 557.697 kb on + strand, within paaK-1 at 557.760 kb on + strand at 557.782 kb on + strand at 557.829 kb on - strand at 557.829 kb on - strand at 557.844 kb on + strand at 557.844 kb on + strand at 557.871 kb on + strand at 557.878 kb on + strand at 557.886 kb on - strand at 557.886 kb on - strand at 557.888 kb on - strand at 557.888 kb on - strand at 557.934 kb on - strand at 557.936 kb on - strand at 557.967 kb on + strand at 557.988 kb on - strand at 558.112 kb on - strand at 558.127 kb on - strand at 558.252 kb on + strand at 558.260 kb on - strand at 558.315 kb on + strand at 558.411 kb on + strand at 558.419 kb on - strand at 558.455 kb on + strand at 558.463 kb on - strand at 558.555 kb on + strand at 558.571 kb on + strand at 558.603 kb on + strand at 558.611 kb on - strand at 558.723 kb on + strand, within DORF5594 at 558.740 kb on - strand, within DORF5594 at 558.763 kb on + strand, within DORF5594 at 558.765 kb on + strand, within DORF5594 at 558.810 kb on - strand, within DORF5594 at 558.913 kb on + strand, within DORF5594 at 558.913 kb on + strand, within DORF5594 at 558.923 kb on + strand, within DORF5594 at 558.924 kb on + strand, within DORF5594 at 558.936 kb on + strand, within DORF5594 at 558.963 kb on + strand, within DORF5594 at 558.971 kb on - strand, within DORF5594 at 558.987 kb on - strand, within DORF5594 at 558.987 kb on - strand, within DORF5594 at 558.994 kb on - strand, within DORF5594 at 559.083 kb on - strand, within DORF5594 at 559.121 kb on + strand, within DORF5594 at 559.149 kb on - strand, within DORF5594 at 559.169 kb on + strand, within DORF5594 at 559.174 kb on + strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.221 kb on + strand, within DORF5594 at 559.318 kb on - strand, within DORF5594 at 559.386 kb on - strand, within DORF5594 at 559.528 kb on + strand at 559.548 kb on + strand at 559.674 kb on - strand at 559.717 kb on - strand at 559.821 kb on - strand at 559.841 kb on + strand at 560.062 kb on - strand, within DVU0491 at 560.128 kb on + strand, within DVU0491 at 560.136 kb on + strand, within DVU0491 at 560.238 kb on - strand, within DVU0491 at 560.288 kb on + strand, within DVU0491 at 560.302 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.309 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.353 kb on + strand, within DVU0491 at 560.473 kb on - strand, within DVU0491
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Spermidine (N) remove 557,595 + paaK-1 DVU0489 0.78 +0.5 557,595 + paaK-1 DVU0489 0.78 -0.3 557,603 - paaK-1 DVU0489 0.78 -0.5 557,688 + paaK-1 DVU0489 0.85 -0.1 557,697 + paaK-1 DVU0489 0.86 +0.6 557,760 + +0.2 557,782 + -0.0 557,829 - -0.1 557,829 - -2.1 557,844 + -0.1 557,844 + -0.1 557,871 + -0.4 557,878 + -1.9 557,886 - +0.2 557,886 - +0.1 557,888 - +0.2 557,888 - -0.1 557,934 - -2.2 557,936 - -0.1 557,967 + +0.4 557,988 - -0.5 558,112 - +0.2 558,127 - -2.1 558,252 + -0.3 558,260 - +0.1 558,315 + +1.0 558,411 + -1.3 558,419 - -1.3 558,455 + +0.1 558,463 - +1.3 558,555 + +0.5 558,571 + +0.3 558,603 + -1.3 558,611 - +0.5 558,723 + DORF5594 0.16 -0.1 558,740 - DORF5594 0.18 -2.0 558,763 + DORF5594 0.21 -0.2 558,765 + DORF5594 0.21 -0.9 558,810 - DORF5594 0.26 +0.5 558,913 + DORF5594 0.37 -1.4 558,913 + DORF5594 0.37 -0.8 558,923 + DORF5594 0.38 +0.1 558,924 + DORF5594 0.38 +0.9 558,936 + DORF5594 0.40 +0.5 558,963 + DORF5594 0.43 +0.2 558,971 - DORF5594 0.43 +0.4 558,987 - DORF5594 0.45 +0.2 558,987 - DORF5594 0.45 +0.3 558,994 - DORF5594 0.46 -0.1 559,083 - DORF5594 0.56 +1.2 559,121 + DORF5594 0.60 -0.3 559,149 - DORF5594 0.63 -0.5 559,169 + DORF5594 0.65 +0.4 559,174 + DORF5594 0.66 +0.2 559,177 - DORF5594 0.66 -1.5 559,177 - DORF5594 0.66 -0.0 559,177 - DORF5594 0.66 -1.0 559,177 - DORF5594 0.66 -0.5 559,221 + DORF5594 0.71 -1.2 559,318 - DORF5594 0.81 +0.1 559,386 - DORF5594 0.89 +0.3 559,528 + -2.0 559,548 + +1.1 559,674 - -0.9 559,717 - -0.1 559,821 - +0.7 559,841 + -0.4 560,062 - DVU0491 0.20 -0.4 560,128 + DVU0491 0.25 +0.2 560,136 + DVU0491 0.26 -0.5 560,238 - DVU0491 0.34 -0.3 560,288 + DVU0491 0.39 +0.1 560,302 + DVU0491 0.40 -1.5 560,303 + DVU0491 0.40 -2.0 560,303 + DVU0491 0.40 -0.5 560,303 + DVU0491 0.40 +0.3 560,309 - DVU0491 0.40 -0.1 560,311 - DVU0491 0.41 -1.0 560,311 - DVU0491 0.41 -0.1 560,311 - DVU0491 0.41 -0.2 560,353 + DVU0491 0.44 +0.2 560,473 - DVU0491 0.54 -0.0
Or see this region's nucleotide sequence