Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2213

Experiment: BG11 with Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrps11 and rpsM are separated by 69 nucleotidesrpsM and rpmJ are separated by 154 nucleotidesrpmJ and adk are separated by 73 nucleotidesadk and secY overlap by 1 nucleotides Synpcc7942_2210: rps11 - 30S ribosomal protein S11, at 2,287,781 to 2,288,173 rps11 Synpcc7942_2211: rpsM - 30S ribosomal protein S13, at 2,288,243 to 2,288,620 rpsM Synpcc7942_2212: rpmJ - 50S ribosomal protein L36, at 2,288,775 to 2,288,888 rpmJ Synpcc7942_2213: adk - adenylate kinase, at 2,288,962 to 2,289,522 adk Synpcc7942_2214: secY - preprotein translocase subunit SecY, at 2,289,522 to 2,290,841 secY Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -2 -1 0 1at 2288.241 kb on + strandat 2288.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 250 mM
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2,288,241 + -1.1
2,288,247 - -1.8

Or see this region's nucleotide sequence