Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1573

Experiment: BG11 with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with Chloride 250 mM
1,632,000	-		Synpcc7942_1572	0.42	-1.9
1,632,012	+		Synpcc7942_1572	0.42	-0.9
1,632,020	-		Synpcc7942_1572	0.43	-0.3
1,632,025	+		Synpcc7942_1572	0.43	-1.4
1,632,025	+		Synpcc7942_1572	0.43	-2.6
1,632,025	+		Synpcc7942_1572	0.43	+1.3
1,632,031	+		Synpcc7942_1572	0.44	-1.3
1,632,033	-		Synpcc7942_1572	0.44	+0.1
1,632,034	-		Synpcc7942_1572	0.44	-1.8
1,632,037	+		Synpcc7942_1572	0.44	+2.2
1,632,037	+		Synpcc7942_1572	0.44	-1.3
1,632,044	+		Synpcc7942_1572	0.44	+1.2
1,632,045	-		Synpcc7942_1572	0.44	+0.8
1,632,060	+		Synpcc7942_1572	0.45	+0.0
1,632,084	+		Synpcc7942_1572	0.47	+0.2
1,632,107	+		Synpcc7942_1572	0.48	+1.0
1,632,119	-		Synpcc7942_1572	0.49	-0.1
1,632,121	+		Synpcc7942_1572	0.49	-0.6
1,632,121	+		Synpcc7942_1572	0.49	-1.0
1,632,121	+				+1.1
1,632,124	-		Synpcc7942_1572	0.49	+0.9
1,632,124	-		Synpcc7942_1572	0.49	+0.0
1,632,124	-		Synpcc7942_1572	0.49	-0.2
1,632,129	-		Synpcc7942_1572	0.50	+0.6
1,632,129	-		Synpcc7942_1572	0.50	-1.1
1,632,173	+		Synpcc7942_1572	0.53	-0.9
1,632,204	+		Synpcc7942_1572	0.55	+1.3
1,632,214	+		Synpcc7942_1572	0.55	+0.3
1,632,217	-		Synpcc7942_1572	0.55	-0.8
1,632,222	+		Synpcc7942_1572	0.56	-0.1
1,632,232	+		Synpcc7942_1572	0.56	-0.5
1,632,253	+		Synpcc7942_1572	0.58	-1.4
1,632,355	+		Synpcc7942_1572	0.64	-0.2
1,632,363	-		Synpcc7942_1572	0.65	+0.9
1,632,442	+		Synpcc7942_1572	0.70	-1.0
1,632,450	-				+2.4
1,632,482	+		Synpcc7942_1572	0.72	-0.5
1,632,497	-		Synpcc7942_1572	0.73	-1.2
1,632,502	+		Synpcc7942_1572	0.73	-0.6
1,632,503	-		Synpcc7942_1572	0.73	+0.1
1,632,505	-		Synpcc7942_1572	0.73	+0.9
1,632,519	-		Synpcc7942_1572	0.74	+0.3
1,632,527	+		Synpcc7942_1572	0.75	+0.6
1,632,598	+		Synpcc7942_1572	0.79	-1.1
1,632,606	-		Synpcc7942_1572	0.80	-2.6
1,632,606	-		Synpcc7942_1572	0.80	+1.0
1,632,619	+		Synpcc7942_1572	0.81	+1.2
1,632,619	+		Synpcc7942_1572	0.81	-0.0
1,632,702	+		Synpcc7942_1572	0.86	-1.7
1,632,721	+		Synpcc7942_1572	0.87	+1.2
1,632,726	-		Synpcc7942_1572	0.87	+0.1
1,632,728	-		Synpcc7942_1572	0.88	-0.8
1,632,741	-		Synpcc7942_1572	0.88	-2.4
1,632,760	-		Synpcc7942_1572	0.90	+0.6
1,632,768	+				+0.6
1,632,781	-				-0.9
1,632,810	+				+0.2
1,632,810	+				-3.3
1,632,811	+				+1.2
1,632,819	-				-1.6
1,632,830	+				-0.8
1,632,838	-				-0.1
1,632,840	+				-0.8
1,632,846	+				-0.6
1,632,854	-				-1.7
1,632,893	-				-0.4
1,632,893	-				+0.7
1,632,893	-				+0.7
1,632,893	-				-0.4
1,632,893	-				-1.1
1,632,895	-				-0.6
1,632,904	-				-0.3
1,632,919	+				-0.1
1,632,920	+				+1.4
1,632,927	-				-0.4
1,632,927	-				+1.8
1,632,962	+				+1.3
1,632,971	+				-1.9
1,632,976	+				-0.3
1,632,988	+				+2.4
1,632,991	-				-0.5
1,633,023	+				-0.6
1,633,023	+				+2.7
1,633,038	-				-0.6
1,633,073	+				-1.0
1,633,101	+		Synpcc7942_1573	0.13	-0.1
1,633,101	-		Synpcc7942_1573	0.13	-1.9
1,633,111	+		Synpcc7942_1573	0.15	-1.7
1,633,119	-		Synpcc7942_1573	0.16	-1.0
1,633,119	-		Synpcc7942_1573	0.16	-1.0
1,633,119	-		Synpcc7942_1573	0.16	+0.8
1,633,121	+		Synpcc7942_1573	0.16	-2.0
1,633,129	-		Synpcc7942_1573	0.17	-4.9
1,633,151	-		Synpcc7942_1573	0.20	-0.4
1,633,151	-		Synpcc7942_1573	0.20	+4.0
1,633,151	-		Synpcc7942_1573	0.20	-2.9
1,633,159	+		Synpcc7942_1573	0.21	-0.7
1,633,167	-		Synpcc7942_1573	0.22	-0.3
1,633,204	+		Synpcc7942_1573	0.26	-0.8
1,633,204	-		Synpcc7942_1573	0.26	-2.3
1,633,213	+		Synpcc7942_1573	0.27	-0.1
1,633,213	+		Synpcc7942_1573	0.27	-0.9
1,633,213	+		Synpcc7942_1573	0.27	+1.1
1,633,221	-		Synpcc7942_1573	0.28	+0.7
1,633,221	-		Synpcc7942_1573	0.28	-1.0
1,633,221	-		Synpcc7942_1573	0.28	-0.7
1,633,221	-		Synpcc7942_1573	0.28	+1.9
1,633,282	+		Synpcc7942_1573	0.36	-0.9
1,633,350	-		Synpcc7942_1573	0.44	+0.5
1,633,395	+		Synpcc7942_1573	0.50	-0.2
1,633,398	-		Synpcc7942_1573	0.50	-0.6
1,633,491	+		Synpcc7942_1573	0.62	-0.3
1,633,577	-		Synpcc7942_1573	0.73	-3.0
1,633,729	+				+1.2
1,633,796	-				+0.3
1,633,823	+				-0.3
1,633,870	+				-0.5
1,633,888	-				-0.7
1,633,911	+				-0.1
1,633,934	-				-0.0
1,633,936	+				+0.4
1,633,961	+				-1.9
1,633,963	+				-1.6
1,633,971	-				-1.4
1,634,053	+				-0.2
1,634,061	-				-1.5
1,634,076	+				+0.1
1,634,076	+				+2.4
1,634,076	+				-0.7
1,634,076	+				-0.3
1,634,210	-		Synpcc7942_1574	0.12	-1.4
1,634,234	+		Synpcc7942_1574	0.13	+0.4
1,634,246	+		Synpcc7942_1574	0.13	-0.7
1,634,249	-		Synpcc7942_1574	0.13	-1.1
1,634,254	-		Synpcc7942_1574	0.13	+0.3
1,634,254	-		Synpcc7942_1574	0.13	-0.4
1,634,268	-		Synpcc7942_1574	0.14	-1.9
1,634,277	-		Synpcc7942_1574	0.14	+0.8
1,634,288	+		Synpcc7942_1574	0.15	+0.2
1,634,294	+		Synpcc7942_1574	0.15	+1.9
1,634,296	-		Synpcc7942_1574	0.15	-2.3
1,634,304	+		Synpcc7942_1574	0.15	+0.0
1,634,346	+		Synpcc7942_1574	0.17	-2.4
1,634,364	-		Synpcc7942_1574	0.18	-1.3
1,634,421	+		Synpcc7942_1574	0.20	-1.1
1,634,501	-		Synpcc7942_1574	0.23	+2.3
1,634,525	+		Synpcc7942_1574	0.24	+0.6
1,634,528	-		Synpcc7942_1574	0.24	+1.7
1,634,531	-		Synpcc7942_1574	0.24	-0.1
1,634,555	+		Synpcc7942_1574	0.25	-0.3
1,634,582	-		Synpcc7942_1574	0.26	-1.1
1,634,606	-		Synpcc7942_1574	0.27	-0.9
1,634,620	+		Synpcc7942_1574	0.27	-0.4
1,634,620	+		Synpcc7942_1574	0.27	-1.6
1,634,620	+		Synpcc7942_1574	0.27	+0.4
1,634,634	+				+0.1
1,634,642	-		Synpcc7942_1574	0.28	-1.0
1,634,678	-				+0.9
1,634,683	+		Synpcc7942_1574	0.29	+2.0
1,634,709	-		Synpcc7942_1574	0.30	+0.4
1,634,729	+		Synpcc7942_1574	0.31	+2.4
1,634,783	-		Synpcc7942_1574	0.33	-0.7