Experiment: BG11 with Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides Synpcc7942_0780 and ppsA are separated by 45 nucleotides
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958
_0780
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 772.439 kb on - strand at 772.489 kb on + strand at 772.567 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.638 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on + strand at 772.705 kb on - strand at 772.748 kb on + strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.854 kb on - strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 773.047 kb on - strand, within Synpcc7942_0780 at 773.087 kb on + strand, within Synpcc7942_0780 at 773.095 kb on + strand, within Synpcc7942_0780 at 773.103 kb on - strand at 773.103 kb on - strand, within Synpcc7942_0780 at 773.136 kb on + strand, within Synpcc7942_0780 at 773.144 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.191 kb on + strand, within Synpcc7942_0780 at 773.230 kb on + strand, within Synpcc7942_0780 at 773.268 kb on + strand, within Synpcc7942_0780 at 773.276 kb on - strand, within Synpcc7942_0780 at 773.298 kb on - strand, within Synpcc7942_0780 at 773.337 kb on + strand, within Synpcc7942_0780 at 773.340 kb on - strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.357 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.372 kb on - strand, within Synpcc7942_0780 at 773.380 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.410 kb on - strand, within Synpcc7942_0780 at 773.415 kb on - strand, within Synpcc7942_0780 at 773.431 kb on - strand, within Synpcc7942_0780 at 773.432 kb on - strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.491 kb on - strand at 773.491 kb on - strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.586 kb on - strand, within Synpcc7942_0780 at 773.592 kb on - strand, within Synpcc7942_0780 at 773.596 kb on + strand, within Synpcc7942_0780 at 773.599 kb on + strand, within Synpcc7942_0780 at 773.599 kb on - strand, within Synpcc7942_0780 at 773.607 kb on + strand, within Synpcc7942_0780 at 773.615 kb on - strand, within Synpcc7942_0780 at 773.668 kb on - strand, within Synpcc7942_0780 at 773.684 kb on - strand, within Synpcc7942_0780 at 773.686 kb on + strand, within Synpcc7942_0780 at 773.704 kb on + strand, within Synpcc7942_0780 at 773.709 kb on - strand, within Synpcc7942_0780 at 773.711 kb on + strand, within Synpcc7942_0780 at 773.757 kb on - strand, within Synpcc7942_0780 at 773.851 kb on + strand at 773.875 kb on + strand at 773.880 kb on + strand at 773.893 kb on - strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.898 kb on + strand at 773.903 kb on - strand at 773.908 kb on + strand at 773.926 kb on + strand at 773.926 kb on + strand at 773.959 kb on - strand at 773.959 kb on - strand at 773.961 kb on - strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.990 kb on - strand at 773.990 kb on - strand at 773.994 kb on + strand at 774.000 kb on - strand at 774.002 kb on - strand at 774.010 kb on - strand at 774.010 kb on - strand at 774.015 kb on - strand at 774.017 kb on + strand at 774.025 kb on - strand at 774.025 kb on - strand at 774.044 kb on + strand at 774.082 kb on - strand at 774.082 kb on - strand at 774.093 kb on - strand at 774.184 kb on - strand at 774.185 kb on - strand at 774.235 kb on + strand at 774.267 kb on - strand, within ppsA at 774.291 kb on + strand, within ppsA at 774.294 kb on - strand, within ppsA at 774.299 kb on - strand, within ppsA at 774.315 kb on + strand, within ppsA at 774.336 kb on + strand, within ppsA at 774.336 kb on - strand, within ppsA at 774.344 kb on - strand, within ppsA at 774.346 kb on + strand, within ppsA at 774.353 kb on + strand, within ppsA at 774.354 kb on - strand, within ppsA at 774.361 kb on - strand, within ppsA at 774.363 kb on + strand, within ppsA at 774.363 kb on - strand, within ppsA at 774.371 kb on - strand, within ppsA at 774.374 kb on + strand, within ppsA at 774.378 kb on - strand, within ppsA at 774.382 kb on - strand, within ppsA at 774.425 kb on + strand, within ppsA at 774.445 kb on + strand, within ppsA at 774.463 kb on - strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.485 kb on - strand, within ppsA at 774.489 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.492 kb on + strand, within ppsA at 774.495 kb on - strand, within ppsA at 774.512 kb on + strand, within ppsA at 774.543 kb on + strand, within ppsA at 774.543 kb on - strand, within ppsA at 774.558 kb on + strand, within ppsA at 774.566 kb on - strand at 774.566 kb on - strand, within ppsA at 774.620 kb on - strand, within ppsA at 774.723 kb on + strand, within ppsA at 774.731 kb on - strand, within ppsA at 774.813 kb on + strand, within ppsA at 774.821 kb on - strand, within ppsA at 774.872 kb on + strand, within ppsA at 774.875 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.912 kb on + strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.921 kb on - strand, within ppsA at 774.954 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on - strand, within ppsA at 774.956 kb on - strand, within ppsA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 250 mM remove 772,439 - +0.3 772,489 + +1.8 772,567 + -0.9 772,572 + -1.4 772,572 + -1.9 772,572 + +0.4 772,638 + +0.2 772,696 + -0.1 772,696 + +0.5 772,697 + -1.6 772,705 - -0.4 772,748 + Synpcc7942_0780 0.12 -0.5 772,807 - Synpcc7942_0780 0.16 -0.1 772,807 - Synpcc7942_0780 0.16 -2.0 772,854 - Synpcc7942_0780 0.20 -1.2 772,996 + Synpcc7942_0780 0.30 -2.4 772,996 + Synpcc7942_0780 0.30 +0.0 773,047 - Synpcc7942_0780 0.34 +0.7 773,087 + Synpcc7942_0780 0.37 +0.1 773,095 + Synpcc7942_0780 0.37 -1.3 773,103 - +0.1 773,103 - Synpcc7942_0780 0.38 -0.4 773,136 + Synpcc7942_0780 0.40 -0.9 773,144 - Synpcc7942_0780 0.41 +1.0 773,160 - Synpcc7942_0780 0.42 -2.8 773,160 - Synpcc7942_0780 0.42 +0.3 773,160 - Synpcc7942_0780 0.42 -0.4 773,191 + Synpcc7942_0780 0.44 -0.4 773,230 + Synpcc7942_0780 0.47 +0.1 773,268 + Synpcc7942_0780 0.50 -1.6 773,276 - Synpcc7942_0780 0.50 +1.2 773,298 - Synpcc7942_0780 0.52 -0.3 773,337 + Synpcc7942_0780 0.55 +0.4 773,340 - Synpcc7942_0780 0.55 +1.4 773,351 + Synpcc7942_0780 0.56 +3.9 773,351 + Synpcc7942_0780 0.56 +0.2 773,357 - Synpcc7942_0780 0.56 -0.6 773,359 - Synpcc7942_0780 0.56 +1.6 773,359 - Synpcc7942_0780 0.56 -1.9 773,359 - Synpcc7942_0780 0.56 +0.6 773,372 - Synpcc7942_0780 0.57 +1.8 773,380 - Synpcc7942_0780 0.58 -0.6 773,382 - Synpcc7942_0780 0.58 +0.3 773,382 - Synpcc7942_0780 0.58 +1.4 773,388 - Synpcc7942_0780 0.58 +0.6 773,388 - Synpcc7942_0780 0.58 -1.7 773,402 + Synpcc7942_0780 0.59 -1.7 773,402 + Synpcc7942_0780 0.59 +1.4 773,402 + Synpcc7942_0780 0.59 -0.3 773,402 + Synpcc7942_0780 0.59 +0.4 773,410 - Synpcc7942_0780 0.60 -1.2 773,415 - Synpcc7942_0780 0.60 -2.4 773,431 - Synpcc7942_0780 0.62 -2.5 773,432 - Synpcc7942_0780 0.62 +0.6 773,458 + Synpcc7942_0780 0.64 -1.4 773,458 + Synpcc7942_0780 0.64 -1.5 773,466 - Synpcc7942_0780 0.64 +1.8 773,466 - Synpcc7942_0780 0.64 -0.4 773,483 + Synpcc7942_0780 0.65 -0.9 773,483 + Synpcc7942_0780 0.65 +1.8 773,483 + Synpcc7942_0780 0.65 -1.3 773,491 - +0.8 773,491 - Synpcc7942_0780 0.66 +1.1 773,550 + Synpcc7942_0780 0.70 -1.9 773,550 + Synpcc7942_0780 0.70 +1.5 773,558 - Synpcc7942_0780 0.71 +0.2 773,558 - Synpcc7942_0780 0.71 +0.6 773,586 - Synpcc7942_0780 0.73 +1.1 773,592 - Synpcc7942_0780 0.73 +1.4 773,596 + Synpcc7942_0780 0.74 -0.4 773,599 + Synpcc7942_0780 0.74 +0.3 773,599 - Synpcc7942_0780 0.74 -0.9 773,607 + Synpcc7942_0780 0.74 +0.4 773,615 - Synpcc7942_0780 0.75 -0.4 773,668 - Synpcc7942_0780 0.79 +0.2 773,684 - Synpcc7942_0780 0.80 +0.8 773,686 + Synpcc7942_0780 0.80 -0.6 773,704 + Synpcc7942_0780 0.81 +0.2 773,709 - Synpcc7942_0780 0.82 -2.4 773,711 + Synpcc7942_0780 0.82 +1.1 773,757 - Synpcc7942_0780 0.85 +1.0 773,851 + -2.5 773,875 + -0.6 773,880 + -1.1 773,893 - +1.3 773,895 + -0.3 773,895 + +0.1 773,895 + +0.0 773,895 + -0.5 773,898 + +0.0 773,903 - +0.6 773,908 + -0.6 773,926 + -0.7 773,926 + -1.0 773,959 - -0.3 773,959 - -0.4 773,961 - -2.5 773,982 + -1.1 773,982 + -0.4 773,982 + -2.4 773,990 - +0.4 773,990 - -0.4 773,994 + -0.3 774,000 - -2.3 774,002 - -1.4 774,010 - +0.8 774,010 - -0.4 774,015 - -0.1 774,017 + +0.3 774,025 - -0.2 774,025 - +1.1 774,044 + +0.7 774,082 - +0.2 774,082 - -1.1 774,093 - -3.1 774,184 - +0.3 774,185 - -0.8 774,235 + +0.4 774,267 - ppsA Synpcc7942_0781 0.10 -1.1 774,291 + ppsA Synpcc7942_0781 0.11 +1.0 774,294 - ppsA Synpcc7942_0781 0.12 -1.0 774,299 - ppsA Synpcc7942_0781 0.12 -0.6 774,315 + ppsA Synpcc7942_0781 0.12 +1.1 774,336 + ppsA Synpcc7942_0781 0.13 -0.7 774,336 - ppsA Synpcc7942_0781 0.13 +0.6 774,344 - ppsA Synpcc7942_0781 0.14 +0.6 774,346 + ppsA Synpcc7942_0781 0.14 +1.5 774,353 + ppsA Synpcc7942_0781 0.14 -0.4 774,354 - ppsA Synpcc7942_0781 0.14 -1.6 774,361 - ppsA Synpcc7942_0781 0.14 +0.8 774,363 + ppsA Synpcc7942_0781 0.14 -0.1 774,363 - ppsA Synpcc7942_0781 0.14 +1.3 774,371 - ppsA Synpcc7942_0781 0.15 -0.1 774,374 + ppsA Synpcc7942_0781 0.15 +0.6 774,378 - ppsA Synpcc7942_0781 0.15 -0.3 774,382 - ppsA Synpcc7942_0781 0.15 -0.9 774,425 + ppsA Synpcc7942_0781 0.17 -0.7 774,445 + ppsA Synpcc7942_0781 0.18 +1.2 774,463 - ppsA Synpcc7942_0781 0.18 -0.5 774,482 + ppsA Synpcc7942_0781 0.19 +1.7 774,482 + ppsA Synpcc7942_0781 0.19 -0.6 774,482 + ppsA Synpcc7942_0781 0.19 +0.3 774,485 - ppsA Synpcc7942_0781 0.19 -2.0 774,489 - ppsA Synpcc7942_0781 0.19 +1.6 774,490 - ppsA Synpcc7942_0781 0.19 -0.5 774,490 - ppsA Synpcc7942_0781 0.19 +1.2 774,490 - ppsA Synpcc7942_0781 0.19 -0.3 774,490 - ppsA Synpcc7942_0781 0.19 +0.6 774,490 - ppsA Synpcc7942_0781 0.19 +0.6 774,490 - ppsA Synpcc7942_0781 0.19 +0.2 774,492 + ppsA Synpcc7942_0781 0.19 +0.8 774,495 - ppsA Synpcc7942_0781 0.20 +0.7 774,512 + ppsA Synpcc7942_0781 0.20 +2.1 774,543 + ppsA Synpcc7942_0781 0.21 +0.3 774,543 - ppsA Synpcc7942_0781 0.21 +0.3 774,558 + ppsA Synpcc7942_0781 0.22 +0.0 774,566 - +1.4 774,566 - ppsA Synpcc7942_0781 0.22 +0.4 774,620 - ppsA Synpcc7942_0781 0.24 +2.4 774,723 + ppsA Synpcc7942_0781 0.29 +2.8 774,731 - ppsA Synpcc7942_0781 0.29 -1.8 774,813 + ppsA Synpcc7942_0781 0.32 -0.2 774,821 - ppsA Synpcc7942_0781 0.32 +0.4 774,872 + ppsA Synpcc7942_0781 0.34 +0.8 774,875 - ppsA Synpcc7942_0781 0.35 -0.8 774,890 - ppsA Synpcc7942_0781 0.35 -0.1 774,890 - ppsA Synpcc7942_0781 0.35 -1.5 774,912 + ppsA Synpcc7942_0781 0.36 -1.3 774,920 - ppsA Synpcc7942_0781 0.36 +0.8 774,920 - ppsA Synpcc7942_0781 0.36 +0.2 774,920 - ppsA Synpcc7942_0781 0.36 -1.2 774,921 - ppsA Synpcc7942_0781 0.36 +0.7 774,954 + ppsA Synpcc7942_0781 0.38 -1.8 774,956 + ppsA Synpcc7942_0781 0.38 -0.8 774,956 + ppsA Synpcc7942_0781 0.38 +1.1 774,956 + ppsA Synpcc7942_0781 0.38 +0.2 774,956 - ppsA Synpcc7942_0781 0.38 +0.5 774,956 - ppsA Synpcc7942_0781 0.38 +0.6
Or see this region's nucleotide sequence