Experiment: BG11 with Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0771 and Synpcc7942_0772 are separated by 129 nucleotides Synpcc7942_0772 and ycf52 are separated by 14 nucleotides ycf52 and Synpcc7942_0774 are separated by 18 nucleotides
Synpcc7942_0771: Synpcc7942_0771 - hypothetical protein, at 763,640 to 764,854
_0771
Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577
_0772
Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197
ycf52
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Position (kb) 764
765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 764.003 kb on - strand, within Synpcc7942_0771 at 764.022 kb on - strand at 764.035 kb on - strand, within Synpcc7942_0771 at 764.042 kb on + strand, within Synpcc7942_0771 at 764.042 kb on + strand, within Synpcc7942_0771 at 764.050 kb on - strand, within Synpcc7942_0771 at 764.084 kb on - strand, within Synpcc7942_0771 at 764.085 kb on - strand, within Synpcc7942_0771 at 764.108 kb on - strand, within Synpcc7942_0771 at 764.119 kb on - strand, within Synpcc7942_0771 at 764.136 kb on - strand, within Synpcc7942_0771 at 764.167 kb on + strand, within Synpcc7942_0771 at 764.167 kb on + strand, within Synpcc7942_0771 at 764.191 kb on + strand, within Synpcc7942_0771 at 764.199 kb on - strand, within Synpcc7942_0771 at 764.201 kb on + strand, within Synpcc7942_0771 at 764.208 kb on + strand, within Synpcc7942_0771 at 764.208 kb on + strand, within Synpcc7942_0771 at 764.214 kb on - strand, within Synpcc7942_0771 at 764.230 kb on + strand, within Synpcc7942_0771 at 764.230 kb on + strand, within Synpcc7942_0771 at 764.245 kb on + strand, within Synpcc7942_0771 at 764.278 kb on + strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.325 kb on + strand, within Synpcc7942_0771 at 764.336 kb on + strand, within Synpcc7942_0771 at 764.344 kb on - strand, within Synpcc7942_0771 at 764.394 kb on + strand, within Synpcc7942_0771 at 764.402 kb on - strand, within Synpcc7942_0771 at 764.418 kb on + strand, within Synpcc7942_0771 at 764.426 kb on - strand, within Synpcc7942_0771 at 764.426 kb on - strand, within Synpcc7942_0771 at 764.444 kb on + strand, within Synpcc7942_0771 at 764.450 kb on + strand, within Synpcc7942_0771 at 764.452 kb on - strand, within Synpcc7942_0771 at 764.457 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.459 kb on - strand, within Synpcc7942_0771 at 764.473 kb on + strand, within Synpcc7942_0771 at 764.474 kb on + strand, within Synpcc7942_0771 at 764.477 kb on + strand, within Synpcc7942_0771 at 764.485 kb on - strand, within Synpcc7942_0771 at 764.520 kb on - strand at 764.520 kb on - strand, within Synpcc7942_0771 at 764.590 kb on + strand, within Synpcc7942_0771 at 764.600 kb on - strand, within Synpcc7942_0771 at 764.613 kb on + strand, within Synpcc7942_0771 at 764.615 kb on + strand, within Synpcc7942_0771 at 764.622 kb on + strand, within Synpcc7942_0771 at 764.659 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.673 kb on - strand, within Synpcc7942_0771 at 764.677 kb on + strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.714 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.720 kb on - strand, within Synpcc7942_0771 at 764.727 kb on - strand at 764.739 kb on - strand at 764.754 kb on - strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.765 kb on + strand at 764.773 kb on - strand at 764.824 kb on + strand at 764.829 kb on + strand at 764.895 kb on + strand at 764.902 kb on + strand at 764.908 kb on - strand at 764.910 kb on - strand at 764.942 kb on + strand at 764.950 kb on - strand at 764.950 kb on - strand at 764.983 kb on - strand at 765.003 kb on - strand at 765.020 kb on + strand at 765.022 kb on + strand at 765.028 kb on - strand at 765.094 kb on + strand, within Synpcc7942_0772 at 765.114 kb on + strand, within Synpcc7942_0772 at 765.114 kb on - strand, within Synpcc7942_0772 at 765.128 kb on + strand, within Synpcc7942_0772 at 765.153 kb on - strand, within Synpcc7942_0772 at 765.167 kb on - strand, within Synpcc7942_0772 at 765.295 kb on + strand, within Synpcc7942_0772 at 765.308 kb on - strand, within Synpcc7942_0772 at 765.310 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.355 kb on - strand, within Synpcc7942_0772 at 765.377 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.414 kb on + strand, within Synpcc7942_0772 at 765.420 kb on - strand, within Synpcc7942_0772 at 765.422 kb on - strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.435 kb on + strand, within Synpcc7942_0772 at 765.436 kb on + strand, within Synpcc7942_0772 at 765.456 kb on + strand, within Synpcc7942_0772 at 765.464 kb on - strand, within Synpcc7942_0772 at 765.521 kb on + strand at 765.523 kb on - strand at 765.535 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.547 kb on + strand at 765.550 kb on - strand at 765.550 kb on - strand at 765.552 kb on + strand at 765.553 kb on - strand at 765.579 kb on - strand at 765.581 kb on - strand at 765.687 kb on + strand, within ycf52 at 765.701 kb on + strand, within ycf52 at 765.748 kb on + strand, within ycf52 at 765.762 kb on - strand, within ycf52 at 765.786 kb on - strand, within ycf52 at 765.813 kb on + strand, within ycf52 at 765.850 kb on + strand, within ycf52 at 765.856 kb on + strand, within ycf52 at 765.919 kb on + strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 766.014 kb on - strand, within ycf52 at 766.048 kb on - strand, within ycf52 at 766.085 kb on - strand, within ycf52 at 766.092 kb on - strand, within ycf52 at 766.100 kb on + strand, within ycf52 at 766.101 kb on - strand, within ycf52 at 766.113 kb on - strand, within ycf52 at 766.143 kb on - strand at 766.154 kb on + strand at 766.154 kb on + strand at 766.162 kb on - strand at 766.182 kb on - strand at 766.186 kb on - strand at 766.221 kb on - strand at 766.248 kb on - strand at 766.250 kb on + strand at 766.258 kb on - strand at 766.272 kb on - strand at 766.310 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.339 kb on + strand, within Synpcc7942_0774 at 766.354 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.415 kb on + strand, within Synpcc7942_0774 at 766.418 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.436 kb on - strand, within Synpcc7942_0774 at 766.473 kb on - strand, within Synpcc7942_0774 at 766.482 kb on - strand, within Synpcc7942_0774 at 766.509 kb on + strand, within Synpcc7942_0774 at 766.523 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.540 kb on + strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 250 mM remove 763,995 + Synpcc7942_0771 0.29 -2.5 763,995 + Synpcc7942_0771 0.29 +0.2 763,995 + Synpcc7942_0771 0.29 +0.3 763,995 + Synpcc7942_0771 0.29 +0.7 763,995 + Synpcc7942_0771 0.29 -1.1 764,003 - Synpcc7942_0771 0.30 +0.1 764,022 - -0.2 764,035 - Synpcc7942_0771 0.33 -1.5 764,042 + Synpcc7942_0771 0.33 +0.9 764,042 + Synpcc7942_0771 0.33 +0.1 764,050 - Synpcc7942_0771 0.34 +0.8 764,084 - Synpcc7942_0771 0.37 -0.3 764,085 - Synpcc7942_0771 0.37 +1.1 764,108 - Synpcc7942_0771 0.39 -0.7 764,119 - Synpcc7942_0771 0.39 -3.8 764,136 - Synpcc7942_0771 0.41 -0.9 764,167 + Synpcc7942_0771 0.43 -0.7 764,167 + Synpcc7942_0771 0.43 -1.6 764,191 + Synpcc7942_0771 0.45 -1.1 764,199 - Synpcc7942_0771 0.46 -0.2 764,201 + Synpcc7942_0771 0.46 -0.3 764,208 + Synpcc7942_0771 0.47 -1.5 764,208 + Synpcc7942_0771 0.47 -1.2 764,214 - Synpcc7942_0771 0.47 +0.8 764,230 + Synpcc7942_0771 0.49 -0.8 764,230 + Synpcc7942_0771 0.49 +0.7 764,245 + Synpcc7942_0771 0.50 -1.2 764,278 + Synpcc7942_0771 0.53 -2.3 764,286 - Synpcc7942_0771 0.53 -1.0 764,286 - Synpcc7942_0771 0.53 -1.4 764,286 - Synpcc7942_0771 0.53 -0.5 764,315 + Synpcc7942_0771 0.56 -0.3 764,315 + Synpcc7942_0771 0.56 -0.9 764,315 + Synpcc7942_0771 0.56 +0.8 764,323 - Synpcc7942_0771 0.56 -0.8 764,323 - Synpcc7942_0771 0.56 -1.2 764,323 - Synpcc7942_0771 0.56 -0.6 764,323 - Synpcc7942_0771 0.56 -1.4 764,323 - Synpcc7942_0771 0.56 -0.1 764,325 + Synpcc7942_0771 0.56 -0.2 764,336 + Synpcc7942_0771 0.57 +0.7 764,344 - Synpcc7942_0771 0.58 -1.8 764,394 + Synpcc7942_0771 0.62 +1.3 764,402 - Synpcc7942_0771 0.63 -1.5 764,418 + Synpcc7942_0771 0.64 -0.9 764,426 - Synpcc7942_0771 0.65 -0.3 764,426 - Synpcc7942_0771 0.65 +0.1 764,444 + Synpcc7942_0771 0.66 -0.1 764,450 + Synpcc7942_0771 0.67 -0.8 764,452 - Synpcc7942_0771 0.67 +1.0 764,457 - Synpcc7942_0771 0.67 -0.1 764,458 - Synpcc7942_0771 0.67 -1.3 764,458 - Synpcc7942_0771 0.67 +1.4 764,458 - Synpcc7942_0771 0.67 +0.5 764,459 - Synpcc7942_0771 0.67 +0.2 764,473 + Synpcc7942_0771 0.69 -1.4 764,474 + Synpcc7942_0771 0.69 -3.0 764,477 + Synpcc7942_0771 0.69 +1.5 764,485 - Synpcc7942_0771 0.70 -0.2 764,520 - -0.6 764,520 - Synpcc7942_0771 0.72 -0.3 764,590 + Synpcc7942_0771 0.78 -2.5 764,600 - Synpcc7942_0771 0.79 -0.1 764,613 + Synpcc7942_0771 0.80 +3.0 764,615 + Synpcc7942_0771 0.80 -2.1 764,622 + Synpcc7942_0771 0.81 -1.3 764,659 + Synpcc7942_0771 0.84 -1.8 764,665 + Synpcc7942_0771 0.84 -0.2 764,665 + Synpcc7942_0771 0.84 +1.4 764,673 - Synpcc7942_0771 0.85 -0.8 764,677 + Synpcc7942_0771 0.85 -2.1 764,678 - Synpcc7942_0771 0.85 -1.1 764,678 - Synpcc7942_0771 0.85 -1.3 764,714 + Synpcc7942_0771 0.88 -0.9 764,719 + Synpcc7942_0771 0.89 -1.4 764,719 + Synpcc7942_0771 0.89 -0.2 764,720 - Synpcc7942_0771 0.89 -0.6 764,727 - -0.9 764,739 - +0.8 764,754 - +0.6 764,755 + +0.8 764,755 + -1.5 764,755 + -0.8 764,755 + +0.3 764,755 + -1.0 764,755 + +0.1 764,763 - +0.3 764,763 - +0.2 764,763 - -0.4 764,763 - -1.9 764,765 + +2.4 764,773 - +1.1 764,824 + -0.3 764,829 + +0.7 764,895 + -1.8 764,902 + +0.6 764,908 - -2.1 764,910 - -2.8 764,942 + +0.2 764,950 - +0.8 764,950 - +0.3 764,983 - -1.1 765,003 - +1.2 765,020 + -0.2 765,022 + +0.4 765,028 - -0.5 765,094 + Synpcc7942_0772 0.19 -0.5 765,114 + Synpcc7942_0772 0.22 -0.8 765,114 - Synpcc7942_0772 0.22 +0.7 765,128 + Synpcc7942_0772 0.24 -0.2 765,153 - Synpcc7942_0772 0.28 -1.3 765,167 - Synpcc7942_0772 0.31 -0.2 765,295 + Synpcc7942_0772 0.52 +1.2 765,308 - Synpcc7942_0772 0.55 +0.7 765,310 - Synpcc7942_0772 0.55 -0.8 765,338 - Synpcc7942_0772 0.60 +0.7 765,338 - Synpcc7942_0772 0.60 +0.3 765,355 - Synpcc7942_0772 0.62 -0.1 765,377 + Synpcc7942_0772 0.66 -0.5 765,390 + Synpcc7942_0772 0.68 +1.4 765,390 + Synpcc7942_0772 0.68 -0.6 765,414 + Synpcc7942_0772 0.72 -1.3 765,420 - Synpcc7942_0772 0.73 -0.3 765,422 - Synpcc7942_0772 0.74 -0.8 765,424 + Synpcc7942_0772 0.74 -0.6 765,424 + Synpcc7942_0772 0.74 +1.9 765,424 + Synpcc7942_0772 0.74 +0.8 765,424 + Synpcc7942_0772 0.74 -0.2 765,424 + Synpcc7942_0772 0.74 -1.0 765,424 + Synpcc7942_0772 0.74 +1.1 765,424 + Synpcc7942_0772 0.74 -0.2 765,432 - Synpcc7942_0772 0.75 +1.3 765,432 - Synpcc7942_0772 0.75 +0.7 765,432 - Synpcc7942_0772 0.75 -0.9 765,432 - Synpcc7942_0772 0.75 -1.1 765,432 - Synpcc7942_0772 0.75 +2.7 765,432 - Synpcc7942_0772 0.75 +4.0 765,435 + Synpcc7942_0772 0.76 -1.1 765,436 + Synpcc7942_0772 0.76 -3.2 765,456 + Synpcc7942_0772 0.79 +2.3 765,464 - Synpcc7942_0772 0.81 +1.6 765,521 + +0.7 765,523 - +0.3 765,535 + +1.1 765,542 + +0.6 765,542 + +2.1 765,542 + +0.2 765,547 + -0.7 765,550 - -0.7 765,550 - -1.0 765,552 + -0.8 765,553 - -1.2 765,579 - -0.7 765,581 - -1.6 765,687 + ycf52 Synpcc7942_0773 0.16 -0.4 765,701 + ycf52 Synpcc7942_0773 0.18 -1.2 765,748 + ycf52 Synpcc7942_0773 0.26 -1.2 765,762 - ycf52 Synpcc7942_0773 0.28 -0.2 765,786 - ycf52 Synpcc7942_0773 0.32 +0.8 765,813 + ycf52 Synpcc7942_0773 0.36 +1.2 765,850 + ycf52 Synpcc7942_0773 0.43 -1.1 765,856 + ycf52 Synpcc7942_0773 0.44 +0.1 765,919 + ycf52 Synpcc7942_0773 0.54 +0.5 765,952 - ycf52 Synpcc7942_0773 0.59 -2.3 765,952 - ycf52 Synpcc7942_0773 0.59 -1.1 766,014 - ycf52 Synpcc7942_0773 0.70 -1.5 766,048 - ycf52 Synpcc7942_0773 0.75 -0.1 766,085 - ycf52 Synpcc7942_0773 0.81 +0.1 766,092 - ycf52 Synpcc7942_0773 0.83 +1.8 766,100 + ycf52 Synpcc7942_0773 0.84 -0.3 766,101 - ycf52 Synpcc7942_0773 0.84 +0.1 766,113 - ycf52 Synpcc7942_0773 0.86 +0.7 766,143 - -0.3 766,154 + +0.9 766,154 + +0.7 766,162 - -0.4 766,182 - +0.8 766,186 - -1.2 766,221 - -0.4 766,248 - +2.2 766,250 + -0.2 766,258 - +0.4 766,272 - -2.2 766,310 + Synpcc7942_0774 0.11 +0.4 766,322 + Synpcc7942_0774 0.12 +0.6 766,322 + Synpcc7942_0774 0.12 -0.1 766,339 + Synpcc7942_0774 0.14 +0.1 766,354 - Synpcc7942_0774 0.16 -2.8 766,375 - Synpcc7942_0774 0.18 -1.6 766,375 - Synpcc7942_0774 0.18 -0.9 766,379 + Synpcc7942_0774 0.18 +0.1 766,379 + Synpcc7942_0774 0.18 +0.0 766,379 + Synpcc7942_0774 0.18 -1.8 766,379 + Synpcc7942_0774 0.18 +0.9 766,387 - Synpcc7942_0774 0.19 +1.1 766,387 - Synpcc7942_0774 0.19 +0.1 766,402 - Synpcc7942_0774 0.21 -1.7 766,402 - Synpcc7942_0774 0.21 -0.9 766,415 + Synpcc7942_0774 0.22 +1.2 766,418 - Synpcc7942_0774 0.23 +0.2 766,423 - Synpcc7942_0774 0.23 +0.5 766,423 - Synpcc7942_0774 0.23 -1.6 766,436 - Synpcc7942_0774 0.25 +3.1 766,473 - Synpcc7942_0774 0.29 -0.2 766,482 - Synpcc7942_0774 0.30 -0.2 766,509 + Synpcc7942_0774 0.33 +0.5 766,523 + Synpcc7942_0774 0.35 -1.0 766,535 + Synpcc7942_0774 0.36 +2.2 766,535 + Synpcc7942_0774 0.36 +0.2 766,540 + Synpcc7942_0774 0.36 -0.8 766,543 - Synpcc7942_0774 0.37 -2.1 766,543 - Synpcc7942_0774 0.37 +1.0 766,545 + Synpcc7942_0774 0.37 -0.8 766,545 + Synpcc7942_0774 0.37 +1.8 766,545 + Synpcc7942_0774 0.37 -1.7 766,545 + Synpcc7942_0774 0.37 +0.3 766,545 + Synpcc7942_0774 0.37 -1.3 766,553 - Synpcc7942_0774 0.38 +0.9 766,553 - Synpcc7942_0774 0.38 -1.2 766,553 - Synpcc7942_0774 0.38 -1.8 766,553 - Synpcc7942_0774 0.38 -1.8
Or see this region's nucleotide sequence