Experiment: BG11 with Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0437 and Synpcc7942_0438 overlap by 41 nucleotides Synpcc7942_0438 and chlM are separated by 115 nucleotides chlM and nagA are separated by 45 nucleotides
Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029
_0437
Synpcc7942_0438: Synpcc7942_0438 - hypothetical protein, at 427,989 to 428,495
_0438
Synpcc7942_0439: chlM - Mg-protoporphyrin IX methyl transferase, at 428,611 to 429,300
chlM
Synpcc7942_0440: nagA - N-acetylglucosamine 6-phosphate deacetylase, at 429,346 to 430,473
nagA
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.679 kb on - strand, within Synpcc7942_0437 at 427.729 kb on + strand, within Synpcc7942_0437 at 427.930 kb on - strand, within Synpcc7942_0437 at 427.952 kb on - strand, within Synpcc7942_0437 at 428.014 kb on + strand at 428.097 kb on + strand, within Synpcc7942_0438 at 428.334 kb on - strand, within Synpcc7942_0438 at 428.460 kb on - strand at 429.296 kb on + strand at 429.343 kb on + strand at 429.351 kb on - strand at 429.352 kb on - strand at 429.354 kb on + strand at 429.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 250 mM remove 427,679 - Synpcc7942_0437 0.38 +0.5 427,729 + Synpcc7942_0437 0.47 -1.3 427,930 - Synpcc7942_0437 0.82 -0.9 427,952 - Synpcc7942_0437 0.86 -0.8 428,014 + +0.5 428,097 + Synpcc7942_0438 0.21 -2.1 428,334 - Synpcc7942_0438 0.68 -0.7 428,460 - +0.2 429,296 + +0.1 429,343 + -0.9 429,351 - +0.6 429,352 - +2.4 429,354 + +0.5 429,362 - +0.1
Or see this region's nucleotide sequence