Experiment: BG11 with Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degT and Synpcc7942_0072 are separated by 167 nucleotides Synpcc7942_0072 and lytB are separated by 39 nucleotides
Synpcc7942_0071: degT - pleiotropic regulatory protein-like, at 69,940 to 71,139
degT
Synpcc7942_0072: Synpcc7942_0072 - hypothetical protein, at 71,307 to 71,960
_0072
Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196
lytB
Position (kb) 71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 71.112 kb on + strand at 71.134 kb on + strand at 71.146 kb on - strand at 71.159 kb on - strand at 71.160 kb on - strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.242 kb on - strand at 71.262 kb on + strand at 71.288 kb on + strand at 71.294 kb on - strand at 71.296 kb on - strand at 71.378 kb on + strand, within Synpcc7942_0072 at 71.386 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.480 kb on - strand, within Synpcc7942_0072 at 71.485 kb on - strand, within Synpcc7942_0072 at 71.499 kb on - strand, within Synpcc7942_0072 at 71.503 kb on + strand, within Synpcc7942_0072 at 71.511 kb on - strand, within Synpcc7942_0072 at 71.571 kb on - strand, within Synpcc7942_0072 at 71.576 kb on - strand, within Synpcc7942_0072 at 71.604 kb on - strand, within Synpcc7942_0072 at 71.610 kb on + strand, within Synpcc7942_0072 at 71.629 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.653 kb on - strand, within Synpcc7942_0072 at 71.661 kb on - strand at 71.694 kb on + strand, within Synpcc7942_0072 at 71.694 kb on + strand, within Synpcc7942_0072 at 71.701 kb on + strand, within Synpcc7942_0072 at 71.709 kb on - strand, within Synpcc7942_0072 at 71.742 kb on - strand, within Synpcc7942_0072 at 71.772 kb on + strand, within Synpcc7942_0072 at 71.817 kb on - strand, within Synpcc7942_0072 at 71.824 kb on - strand, within Synpcc7942_0072 at 71.827 kb on - strand, within Synpcc7942_0072 at 71.834 kb on + strand, within Synpcc7942_0072 at 71.881 kb on - strand, within Synpcc7942_0072 at 71.892 kb on - strand, within Synpcc7942_0072 at 71.903 kb on + strand at 71.911 kb on - strand at 71.918 kb on - strand at 71.918 kb on - strand at 71.942 kb on - strand at 71.962 kb on - strand at 71.966 kb on - strand at 71.972 kb on - strand at 71.974 kb on - strand at 71.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 250 mM remove 71,112 + -0.0 71,134 + -0.0 71,146 - -3.2 71,159 - +0.7 71,160 - -0.5 71,171 + -1.3 71,171 + -0.5 71,171 + -0.6 71,171 + +0.5 71,171 + +0.6 71,171 + -0.5 71,179 - +0.1 71,179 - -0.2 71,179 - +0.8 71,242 - -0.1 71,262 + -1.2 71,288 + -3.6 71,294 - +0.1 71,296 - -1.0 71,378 + Synpcc7942_0072 0.11 -1.0 71,386 - Synpcc7942_0072 0.12 -1.4 71,396 - Synpcc7942_0072 0.14 -1.7 71,396 - Synpcc7942_0072 0.14 -4.0 71,431 + Synpcc7942_0072 0.19 -2.1 71,431 + Synpcc7942_0072 0.19 -2.2 71,480 - Synpcc7942_0072 0.26 -1.3 71,485 - Synpcc7942_0072 0.27 -3.0 71,499 - Synpcc7942_0072 0.29 +0.4 71,503 + Synpcc7942_0072 0.30 -1.3 71,511 - Synpcc7942_0072 0.31 -1.9 71,571 - Synpcc7942_0072 0.40 -0.9 71,576 - Synpcc7942_0072 0.41 +1.1 71,604 - Synpcc7942_0072 0.45 +0.3 71,610 + Synpcc7942_0072 0.46 -0.9 71,629 - Synpcc7942_0072 0.49 -1.4 71,634 - Synpcc7942_0072 0.50 -2.2 71,634 - Synpcc7942_0072 0.50 -2.1 71,653 - Synpcc7942_0072 0.53 -1.4 71,661 - +0.8 71,694 + Synpcc7942_0072 0.59 -1.1 71,694 + Synpcc7942_0072 0.59 -1.2 71,701 + Synpcc7942_0072 0.60 -1.3 71,709 - Synpcc7942_0072 0.61 -1.4 71,742 - Synpcc7942_0072 0.67 -1.4 71,772 + Synpcc7942_0072 0.71 -1.8 71,817 - Synpcc7942_0072 0.78 -0.4 71,824 - Synpcc7942_0072 0.79 -1.7 71,827 - Synpcc7942_0072 0.80 -0.7 71,834 + Synpcc7942_0072 0.81 -1.1 71,881 - Synpcc7942_0072 0.88 +0.2 71,892 - Synpcc7942_0072 0.89 -0.4 71,903 + -1.1 71,911 - -0.7 71,918 - -1.4 71,918 - -1.2 71,942 - -1.5 71,962 - -2.2 71,966 - -1.9 71,972 - -0.4 71,974 - -1.1 71,998 + -0.4
Or see this region's nucleotide sequence