Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33090 and RR42_RS33095 are separated by 326 nucleotides RR42_RS33095 and RR42_RS33100 are separated by 96 nucleotides
RR42_RS33090: RR42_RS33090 - fumarate hydratase, at 2,831,017 to 2,832,420
_RS33090
RR42_RS33095: RR42_RS33095 - LysR family transcriptional regulator, at 2,832,747 to 2,833,652
_RS33095
RR42_RS33100: RR42_RS33100 - oxidoreductase, at 2,833,749 to 2,834,609
_RS33100
Position (kb)
2832
2833
2834 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2831.944 kb on - strand, within RR42_RS33090 at 2832.327 kb on + strand at 2832.443 kb on + strand at 2832.443 kb on + strand at 2832.443 kb on + strand at 2832.443 kb on + strand at 2832.444 kb on - strand at 2832.700 kb on + strand at 2832.701 kb on - strand at 2832.701 kb on - strand at 2832.704 kb on + strand at 2832.704 kb on + strand at 2832.705 kb on - strand at 2832.708 kb on - strand at 2832.717 kb on + strand at 2832.748 kb on + strand at 2832.749 kb on - strand at 2832.772 kb on + strand at 2832.772 kb on + strand at 2832.773 kb on - strand at 2832.773 kb on - strand at 2832.823 kb on + strand at 2832.824 kb on - strand at 2832.824 kb on - strand at 2832.920 kb on - strand, within RR42_RS33095 at 2832.920 kb on - strand, within RR42_RS33095 at 2832.920 kb on - strand, within RR42_RS33095 at 2832.920 kb on - strand, within RR42_RS33095 at 2832.954 kb on + strand, within RR42_RS33095 at 2832.955 kb on - strand, within RR42_RS33095 at 2832.955 kb on - strand, within RR42_RS33095 at 2832.955 kb on - strand, within RR42_RS33095 at 2833.132 kb on + strand, within RR42_RS33095 at 2833.132 kb on + strand, within RR42_RS33095 at 2833.132 kb on + strand, within RR42_RS33095 at 2833.287 kb on + strand, within RR42_RS33095 at 2833.287 kb on + strand, within RR42_RS33095 at 2833.288 kb on - strand, within RR42_RS33095 at 2833.288 kb on - strand, within RR42_RS33095 at 2833.288 kb on - strand, within RR42_RS33095 at 2833.288 kb on - strand, within RR42_RS33095 at 2833.288 kb on - strand, within RR42_RS33095 at 2833.356 kb on + strand, within RR42_RS33095 at 2833.356 kb on + strand, within RR42_RS33095 at 2833.356 kb on + strand, within RR42_RS33095 at 2833.357 kb on - strand, within RR42_RS33095 at 2833.357 kb on - strand, within RR42_RS33095 at 2833.357 kb on - strand, within RR42_RS33095 at 2833.357 kb on - strand, within RR42_RS33095 at 2833.512 kb on + strand, within RR42_RS33095 at 2833.512 kb on + strand, within RR42_RS33095 at 2833.512 kb on + strand, within RR42_RS33095 at 2833.512 kb on + strand, within RR42_RS33095 at 2833.513 kb on - strand, within RR42_RS33095 at 2833.513 kb on - strand, within RR42_RS33095 at 2833.513 kb on - strand, within RR42_RS33095 at 2833.518 kb on + strand, within RR42_RS33095 at 2833.518 kb on + strand, within RR42_RS33095 at 2833.518 kb on + strand, within RR42_RS33095 at 2833.518 kb on + strand, within RR42_RS33095 at 2833.667 kb on + strand at 2833.754 kb on + strand at 2833.771 kb on - strand at 2833.771 kb on - strand at 2833.800 kb on - strand at 2833.911 kb on - strand, within RR42_RS33100 at 2833.911 kb on - strand, within RR42_RS33100 at 2833.930 kb on - strand, within RR42_RS33100 at 2834.128 kb on + strand, within RR42_RS33100 at 2834.128 kb on + strand, within RR42_RS33100 at 2834.128 kb on + strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.129 kb on - strand, within RR42_RS33100 at 2834.147 kb on + strand, within RR42_RS33100 at 2834.147 kb on + strand, within RR42_RS33100 at 2834.147 kb on + strand, within RR42_RS33100 at 2834.148 kb on - strand, within RR42_RS33100 at 2834.367 kb on + strand, within RR42_RS33100 at 2834.493 kb on - strand, within RR42_RS33100 at 2834.504 kb on + strand, within RR42_RS33100 at 2834.505 kb on - strand, within RR42_RS33100 at 2834.567 kb on - strand at 2834.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 2,831,944 - RR42_RS33090 0.66 +0.4 2,832,327 + +0.6 2,832,443 + -0.3 2,832,443 + +0.5 2,832,443 + +0.8 2,832,443 + +0.5 2,832,444 - -3.6 2,832,700 + +0.0 2,832,701 - -0.2 2,832,701 - -1.9 2,832,704 + +0.7 2,832,704 + +0.6 2,832,705 - -0.9 2,832,708 - +1.1 2,832,717 + -0.1 2,832,748 + -0.6 2,832,749 - -1.5 2,832,772 + -0.2 2,832,772 + -0.5 2,832,773 - -1.3 2,832,773 - -0.7 2,832,823 + +1.7 2,832,824 - +1.6 2,832,824 - -0.8 2,832,920 - RR42_RS33095 0.19 +0.6 2,832,920 - RR42_RS33095 0.19 -0.7 2,832,920 - RR42_RS33095 0.19 +0.2 2,832,920 - RR42_RS33095 0.19 +1.0 2,832,954 + RR42_RS33095 0.23 +0.1 2,832,955 - RR42_RS33095 0.23 +0.2 2,832,955 - RR42_RS33095 0.23 +0.4 2,832,955 - RR42_RS33095 0.23 +0.5 2,833,132 + RR42_RS33095 0.42 -0.2 2,833,132 + RR42_RS33095 0.42 +1.3 2,833,132 + RR42_RS33095 0.42 +0.1 2,833,287 + RR42_RS33095 0.60 +0.8 2,833,287 + RR42_RS33095 0.60 -0.1 2,833,288 - RR42_RS33095 0.60 -1.5 2,833,288 - RR42_RS33095 0.60 +0.3 2,833,288 - RR42_RS33095 0.60 -0.4 2,833,288 - RR42_RS33095 0.60 -0.2 2,833,288 - RR42_RS33095 0.60 -1.1 2,833,356 + RR42_RS33095 0.67 -0.3 2,833,356 + RR42_RS33095 0.67 -0.1 2,833,356 + RR42_RS33095 0.67 +1.7 2,833,357 - RR42_RS33095 0.67 +0.3 2,833,357 - RR42_RS33095 0.67 +0.6 2,833,357 - RR42_RS33095 0.67 -0.9 2,833,357 - RR42_RS33095 0.67 +1.1 2,833,512 + RR42_RS33095 0.84 -0.1 2,833,512 + RR42_RS33095 0.84 -0.3 2,833,512 + RR42_RS33095 0.84 -0.0 2,833,512 + RR42_RS33095 0.84 -1.0 2,833,513 - RR42_RS33095 0.85 -0.7 2,833,513 - RR42_RS33095 0.85 +1.1 2,833,513 - RR42_RS33095 0.85 -0.0 2,833,518 + RR42_RS33095 0.85 -2.0 2,833,518 + RR42_RS33095 0.85 +1.6 2,833,518 + RR42_RS33095 0.85 -0.7 2,833,518 + RR42_RS33095 0.85 -0.2 2,833,667 + -1.7 2,833,754 + +0.0 2,833,771 - +1.1 2,833,771 - -2.5 2,833,800 - -0.6 2,833,911 - RR42_RS33100 0.19 +0.6 2,833,911 - RR42_RS33100 0.19 +0.0 2,833,930 - RR42_RS33100 0.21 -0.5 2,834,128 + RR42_RS33100 0.44 -2.9 2,834,128 + RR42_RS33100 0.44 -0.4 2,834,128 + RR42_RS33100 0.44 +0.1 2,834,129 - RR42_RS33100 0.44 -1.1 2,834,129 - RR42_RS33100 0.44 -2.0 2,834,129 - RR42_RS33100 0.44 +2.4 2,834,129 - RR42_RS33100 0.44 -0.9 2,834,129 - RR42_RS33100 0.44 -0.5 2,834,129 - RR42_RS33100 0.44 -1.1 2,834,147 + RR42_RS33100 0.46 +2.4 2,834,147 + RR42_RS33100 0.46 -1.7 2,834,147 + RR42_RS33100 0.46 +2.5 2,834,148 - RR42_RS33100 0.46 -0.1 2,834,367 + RR42_RS33100 0.72 +0.4 2,834,493 - RR42_RS33100 0.86 +0.5 2,834,504 + RR42_RS33100 0.88 -0.1 2,834,505 - RR42_RS33100 0.88 -0.0 2,834,567 - +0.6 2,834,628 + -0.4
Or see this region's nucleotide sequence