Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31735 and RR42_RS31740 overlap by 4 nucleotides RR42_RS31740 and RR42_RS31745 are separated by 14 nucleotides RR42_RS31745 and RR42_RS31750 are separated by 76 nucleotides
RR42_RS31735: RR42_RS31735 - ABC transporter ATP-binding protein, at 2,497,012 to 2,497,773
_RS31735
RR42_RS31740: RR42_RS31740 - ABC transporter permease, at 2,497,770 to 2,498,438
_RS31740
RR42_RS31745: RR42_RS31745 - ABC transporter permease, at 2,498,453 to 2,499,202
_RS31745
RR42_RS31750: RR42_RS31750 - IclR family transcriptional regulator, at 2,499,279 to 2,500,046
_RS31750
Position (kb)
2498
2499
2500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2497.791 kb on - strand at 2497.849 kb on + strand, within RR42_RS31740 at 2497.849 kb on + strand, within RR42_RS31740 at 2497.850 kb on - strand, within RR42_RS31740 at 2497.850 kb on - strand, within RR42_RS31740 at 2497.871 kb on - strand, within RR42_RS31740 at 2497.948 kb on - strand, within RR42_RS31740 at 2497.948 kb on - strand, within RR42_RS31740 at 2498.132 kb on - strand, within RR42_RS31740 at 2498.282 kb on - strand, within RR42_RS31740 at 2498.282 kb on - strand, within RR42_RS31740 at 2498.455 kb on - strand at 2498.455 kb on - strand at 2498.455 kb on - strand at 2498.458 kb on + strand at 2498.458 kb on + strand at 2498.458 kb on + strand at 2498.458 kb on + strand at 2498.497 kb on - strand at 2498.581 kb on - strand, within RR42_RS31745 at 2498.637 kb on + strand, within RR42_RS31745 at 2498.637 kb on + strand, within RR42_RS31745 at 2498.637 kb on + strand, within RR42_RS31745 at 2498.638 kb on - strand, within RR42_RS31745 at 2498.638 kb on - strand, within RR42_RS31745 at 2498.746 kb on - strand, within RR42_RS31745 at 2498.746 kb on - strand, within RR42_RS31745 at 2498.746 kb on - strand, within RR42_RS31745 at 2498.793 kb on - strand, within RR42_RS31745 at 2498.793 kb on - strand, within RR42_RS31745 at 2498.821 kb on + strand, within RR42_RS31745 at 2498.874 kb on + strand, within RR42_RS31745 at 2498.875 kb on - strand, within RR42_RS31745 at 2498.919 kb on + strand, within RR42_RS31745 at 2498.919 kb on + strand, within RR42_RS31745 at 2498.919 kb on + strand, within RR42_RS31745 at 2498.919 kb on + strand, within RR42_RS31745 at 2498.920 kb on - strand, within RR42_RS31745 at 2498.920 kb on - strand, within RR42_RS31745 at 2499.218 kb on + strand at 2499.219 kb on - strand at 2499.222 kb on + strand at 2499.223 kb on - strand at 2499.241 kb on + strand at 2499.280 kb on + strand at 2499.280 kb on + strand at 2499.281 kb on - strand at 2499.479 kb on - strand, within RR42_RS31750 at 2499.724 kb on - strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2500.012 kb on + strand at 2500.078 kb on - strand at 2500.099 kb on - strand at 2500.128 kb on + strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.196 kb on - strand at 2500.196 kb on - strand at 2500.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 2,497,791 - +0.9 2,497,849 + RR42_RS31740 0.12 -0.3 2,497,849 + RR42_RS31740 0.12 -3.2 2,497,850 - RR42_RS31740 0.12 -0.5 2,497,850 - RR42_RS31740 0.12 -0.9 2,497,871 - RR42_RS31740 0.15 +1.6 2,497,948 - RR42_RS31740 0.27 +0.7 2,497,948 - RR42_RS31740 0.27 +0.8 2,498,132 - RR42_RS31740 0.54 -0.4 2,498,282 - RR42_RS31740 0.77 +0.2 2,498,282 - RR42_RS31740 0.77 -1.9 2,498,455 - -0.1 2,498,455 - +2.5 2,498,455 - +0.2 2,498,458 + -0.6 2,498,458 + -0.2 2,498,458 + +1.2 2,498,458 + -0.0 2,498,497 - -0.4 2,498,581 - RR42_RS31745 0.17 -0.5 2,498,637 + RR42_RS31745 0.25 +0.2 2,498,637 + RR42_RS31745 0.25 -0.2 2,498,637 + RR42_RS31745 0.25 -0.3 2,498,638 - RR42_RS31745 0.25 -0.6 2,498,638 - RR42_RS31745 0.25 +0.6 2,498,746 - RR42_RS31745 0.39 +1.0 2,498,746 - RR42_RS31745 0.39 +1.1 2,498,746 - RR42_RS31745 0.39 -1.4 2,498,793 - RR42_RS31745 0.45 -0.9 2,498,793 - RR42_RS31745 0.45 -0.5 2,498,821 + RR42_RS31745 0.49 +0.1 2,498,874 + RR42_RS31745 0.56 +0.3 2,498,875 - RR42_RS31745 0.56 -3.0 2,498,919 + RR42_RS31745 0.62 +0.4 2,498,919 + RR42_RS31745 0.62 +0.2 2,498,919 + RR42_RS31745 0.62 +0.4 2,498,919 + RR42_RS31745 0.62 -0.6 2,498,920 - RR42_RS31745 0.62 +0.1 2,498,920 - RR42_RS31745 0.62 +0.3 2,499,218 + +0.2 2,499,219 - +0.2 2,499,222 + +0.2 2,499,223 - +2.8 2,499,241 + -1.5 2,499,280 + +1.7 2,499,280 + -1.7 2,499,281 - -1.2 2,499,479 - RR42_RS31750 0.26 +1.0 2,499,724 - RR42_RS31750 0.58 -0.2 2,499,838 + RR42_RS31750 0.73 -0.0 2,499,838 + RR42_RS31750 0.73 +0.1 2,500,012 + +1.1 2,500,078 - +1.2 2,500,099 - -1.5 2,500,128 + +1.1 2,500,129 - +0.1 2,500,129 - +0.2 2,500,129 - +0.5 2,500,129 - +1.7 2,500,195 + +0.5 2,500,195 + -0.7 2,500,195 + +1.4 2,500,195 + -2.9 2,500,195 + +0.3 2,500,195 + +0.1 2,500,196 - +1.0 2,500,196 - +0.1 2,500,196 - +0.1
Or see this region's nucleotide sequence