Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27890 and RR42_RS27895 are separated by 26 nucleotides RR42_RS27895 and RR42_RS27900 are separated by 27 nucleotides
RR42_RS27890: RR42_RS27890 - hypothetical protein, at 1,619,955 to 1,620,935
_RS27890
RR42_RS27895: RR42_RS27895 - acetaldehyde dehydrogenase, at 1,620,962 to 1,621,912
_RS27895
RR42_RS27900: RR42_RS27900 - 4-hyroxy-2-oxovalerate aldolase, at 1,621,940 to 1,622,956
_RS27900
Position (kb)
1620
1621
1622 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1620.224 kb on + strand, within RR42_RS27890 at 1620.224 kb on + strand, within RR42_RS27890 at 1620.225 kb on - strand, within RR42_RS27890 at 1620.225 kb on - strand, within RR42_RS27890 at 1620.392 kb on - strand, within RR42_RS27890 at 1620.426 kb on + strand, within RR42_RS27890 at 1620.426 kb on + strand, within RR42_RS27890 at 1620.514 kb on - strand, within RR42_RS27890 at 1621.292 kb on + strand, within RR42_RS27895 at 1621.415 kb on + strand, within RR42_RS27895 at 1621.415 kb on + strand, within RR42_RS27895 at 1621.595 kb on + strand, within RR42_RS27895 at 1621.595 kb on + strand at 1621.596 kb on - strand, within RR42_RS27895 at 1621.596 kb on - strand, within RR42_RS27895 at 1621.596 kb on - strand, within RR42_RS27895 at 1621.596 kb on - strand, within RR42_RS27895 at 1621.808 kb on + strand, within RR42_RS27895 at 1621.809 kb on - strand, within RR42_RS27895 at 1621.820 kb on + strand at 1621.926 kb on - strand at 1621.962 kb on - strand at 1622.013 kb on - strand at 1622.118 kb on - strand, within RR42_RS27900 at 1622.240 kb on + strand, within RR42_RS27900 at 1622.241 kb on - strand, within RR42_RS27900 at 1622.432 kb on + strand, within RR42_RS27900 at 1622.433 kb on - strand, within RR42_RS27900 at 1622.705 kb on + strand, within RR42_RS27900 at 1622.705 kb on + strand, within RR42_RS27900 at 1622.804 kb on + strand, within RR42_RS27900 at 1622.804 kb on + strand, within RR42_RS27900 at 1622.805 kb on - strand, within RR42_RS27900 at 1622.846 kb on + strand, within RR42_RS27900 at 1622.846 kb on + strand, within RR42_RS27900
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 1,620,224 + RR42_RS27890 0.27 +0.6 1,620,224 + RR42_RS27890 0.27 +0.2 1,620,225 - RR42_RS27890 0.28 +0.4 1,620,225 - RR42_RS27890 0.28 +0.4 1,620,392 - RR42_RS27890 0.45 -0.4 1,620,426 + RR42_RS27890 0.48 +0.3 1,620,426 + RR42_RS27890 0.48 +0.3 1,620,514 - RR42_RS27890 0.57 -0.0 1,621,292 + RR42_RS27895 0.35 +0.6 1,621,415 + RR42_RS27895 0.48 +0.1 1,621,415 + RR42_RS27895 0.48 +0.6 1,621,595 + RR42_RS27895 0.67 +1.5 1,621,595 + -1.8 1,621,596 - RR42_RS27895 0.67 -0.4 1,621,596 - RR42_RS27895 0.67 -0.5 1,621,596 - RR42_RS27895 0.67 -0.5 1,621,596 - RR42_RS27895 0.67 +0.9 1,621,808 + RR42_RS27895 0.89 +0.1 1,621,809 - RR42_RS27895 0.89 +0.8 1,621,820 + +0.1 1,621,926 - +2.0 1,621,962 - -0.8 1,622,013 - -0.3 1,622,118 - RR42_RS27900 0.18 +0.2 1,622,240 + RR42_RS27900 0.29 +1.0 1,622,241 - RR42_RS27900 0.30 +0.5 1,622,432 + RR42_RS27900 0.48 +0.7 1,622,433 - RR42_RS27900 0.48 -0.3 1,622,705 + RR42_RS27900 0.75 -0.0 1,622,705 + RR42_RS27900 0.75 +1.4 1,622,804 + RR42_RS27900 0.85 -1.5 1,622,804 + RR42_RS27900 0.85 +1.0 1,622,805 - RR42_RS27900 0.85 +0.3 1,622,846 + RR42_RS27900 0.89 +0.5 1,622,846 + RR42_RS27900 0.89 +0.6
Or see this region's nucleotide sequence