Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25005 and RR42_RS25010 are separated by 60 nucleotides RR42_RS25010 and RR42_RS25015 are separated by 150 nucleotides
RR42_RS25005: RR42_RS25005 - betaine-aldehyde dehydrogenase, at 947,308 to 948,795
_RS25005
RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313
_RS25010
RR42_RS25015: RR42_RS25015 - gluconolactonase, at 950,464 to 951,348
_RS25015
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.166 kb on + strand, within RR42_RS25005 at 948.244 kb on - strand, within RR42_RS25005 at 948.417 kb on + strand, within RR42_RS25005 at 948.417 kb on - strand, within RR42_RS25005 at 948.780 kb on - strand at 948.780 kb on - strand at 948.858 kb on - strand at 948.890 kb on + strand at 948.891 kb on - strand at 948.891 kb on - strand at 948.942 kb on - strand at 948.942 kb on - strand at 948.977 kb on + strand at 948.977 kb on + strand at 948.978 kb on - strand at 949.070 kb on + strand, within RR42_RS25010 at 949.070 kb on + strand, within RR42_RS25010 at 949.071 kb on - strand, within RR42_RS25010 at 949.209 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.358 kb on + strand, within RR42_RS25010 at 949.359 kb on - strand, within RR42_RS25010 at 949.881 kb on + strand, within RR42_RS25010 at 949.881 kb on + strand, within RR42_RS25010 at 949.881 kb on + strand, within RR42_RS25010 at 949.882 kb on - strand, within RR42_RS25010 at 949.946 kb on + strand, within RR42_RS25010 at 949.987 kb on - strand, within RR42_RS25010 at 950.067 kb on + strand, within RR42_RS25010 at 950.249 kb on - strand at 950.397 kb on - strand at 950.397 kb on - strand at 950.397 kb on - strand at 950.600 kb on + strand, within RR42_RS25015 at 950.600 kb on + strand, within RR42_RS25015 at 950.601 kb on - strand, within RR42_RS25015 at 951.263 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.270 kb on - strand at 951.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 948,166 + RR42_RS25005 0.58 -1.4 948,244 - RR42_RS25005 0.63 +0.4 948,417 + RR42_RS25005 0.75 +0.2 948,417 - RR42_RS25005 0.75 +1.0 948,780 - -0.2 948,780 - +0.8 948,858 - +1.1 948,890 + -1.1 948,891 - +0.7 948,891 - +0.4 948,942 - +0.5 948,942 - -0.4 948,977 + +1.1 948,977 + -0.3 948,978 - +1.2 949,070 + RR42_RS25010 0.15 +0.4 949,070 + RR42_RS25010 0.15 +0.7 949,071 - RR42_RS25010 0.15 -0.3 949,209 - RR42_RS25010 0.24 +0.0 949,278 - RR42_RS25010 0.29 +0.2 949,278 - RR42_RS25010 0.29 +1.3 949,278 - RR42_RS25010 0.29 +0.6 949,358 + RR42_RS25010 0.34 -0.4 949,359 - RR42_RS25010 0.34 +0.2 949,881 + RR42_RS25010 0.70 -2.2 949,881 + RR42_RS25010 0.70 +0.2 949,881 + RR42_RS25010 0.70 +1.1 949,882 - RR42_RS25010 0.70 +0.2 949,946 + RR42_RS25010 0.75 -0.5 949,987 - RR42_RS25010 0.78 +0.7 950,067 + RR42_RS25010 0.83 +0.8 950,249 - -2.6 950,397 - +0.2 950,397 - -1.1 950,397 - +0.0 950,600 + RR42_RS25015 0.15 -2.6 950,600 + RR42_RS25015 0.15 -1.0 950,601 - RR42_RS25015 0.15 -2.6 951,263 + +2.3 951,269 + -0.0 951,269 + +0.6 951,269 + -0.7 951,270 - -2.1 951,270 - -1.1
Or see this region's nucleotide sequence