Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24165

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24155 and RR42_RS24160 are separated by 68 nucleotidesRR42_RS24160 and RR42_RS24165 are separated by 60 nucleotidesRR42_RS24165 and RR42_RS24170 are separated by 25 nucleotides RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494 _RS24155 RR42_RS24160: RR42_RS24160 - hypothetical protein, at 746,563 to 747,075 _RS24160 RR42_RS24165: RR42_RS24165 - gentisate 1,2-dioxygenase, at 747,136 to 748,164 _RS24165 RR42_RS24170: RR42_RS24170 - hypothetical protein, at 748,190 to 749,047 _RS24170 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2at 746.209 kb on - strand, within RR42_RS24155at 746.209 kb on - strand, within RR42_RS24155at 746.209 kb on - strand, within RR42_RS24155at 746.391 kb on - strandat 746.451 kb on + strandat 746.781 kb on + strand, within RR42_RS24160at 746.803 kb on - strand, within RR42_RS24160at 746.890 kb on + strand, within RR42_RS24160at 746.890 kb on + strand, within RR42_RS24160at 746.891 kb on - strand, within RR42_RS24160at 746.968 kb on + strand, within RR42_RS24160at 747.004 kb on + strand, within RR42_RS24160at 747.012 kb on + strand, within RR42_RS24160at 747.023 kb on + strand, within RR42_RS24160at 747.073 kb on + strandat 747.073 kb on + strandat 747.073 kb on + strandat 747.073 kb on + strandat 747.073 kb on + strandat 747.074 kb on - strandat 747.074 kb on - strandat 747.281 kb on - strand, within RR42_RS24165at 747.410 kb on + strand, within RR42_RS24165at 747.410 kb on + strand, within RR42_RS24165at 747.490 kb on + strand, within RR42_RS24165at 747.491 kb on - strand, within RR42_RS24165at 747.491 kb on - strand, within RR42_RS24165at 747.543 kb on + strand, within RR42_RS24165at 747.544 kb on - strand, within RR42_RS24165at 747.596 kb on + strand, within RR42_RS24165at 747.597 kb on - strand, within RR42_RS24165at 747.776 kb on - strand, within RR42_RS24165at 747.859 kb on + strand, within RR42_RS24165at 747.859 kb on + strand, within RR42_RS24165at 747.860 kb on - strand, within RR42_RS24165at 747.860 kb on - strand, within RR42_RS24165at 747.860 kb on - strand, within RR42_RS24165at 747.860 kb on - strand, within RR42_RS24165at 747.911 kb on + strand, within RR42_RS24165at 747.911 kb on + strand, within RR42_RS24165at 747.911 kb on + strand, within RR42_RS24165at 747.912 kb on - strand, within RR42_RS24165at 747.912 kb on - strand, within RR42_RS24165at 747.917 kb on - strand, within RR42_RS24165at 747.917 kb on - strand, within RR42_RS24165at 747.954 kb on + strand, within RR42_RS24165at 748.017 kb on + strand, within RR42_RS24165at 748.018 kb on - strand, within RR42_RS24165at 748.074 kb on + strandat 748.295 kb on + strand, within RR42_RS24170at 748.304 kb on + strand, within RR42_RS24170at 748.304 kb on + strand, within RR42_RS24170at 748.359 kb on + strand, within RR42_RS24170at 748.449 kb on - strand, within RR42_RS24170at 748.492 kb on - strand, within RR42_RS24170at 748.754 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.877 kb on + strand, within RR42_RS24170at 748.877 kb on + strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.938 kb on + strand, within RR42_RS24170at 748.939 kb on - strand, within RR42_RS24170at 748.979 kb on + strandat 748.979 kb on + strandat 749.045 kb on + strandat 749.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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746,209 - RR42_RS24155 0.75 -0.6
746,209 - RR42_RS24155 0.75 -0.6
746,209 - RR42_RS24155 0.75 +1.2
746,391 - +1.9
746,451 + -1.0
746,781 + RR42_RS24160 0.42 +0.1
746,803 - RR42_RS24160 0.47 +0.3
746,890 + RR42_RS24160 0.64 -0.8
746,890 + RR42_RS24160 0.64 +1.4
746,891 - RR42_RS24160 0.64 +0.3
746,968 + RR42_RS24160 0.79 -1.4
747,004 + RR42_RS24160 0.86 -1.1
747,012 + RR42_RS24160 0.88 +0.1
747,023 + RR42_RS24160 0.90 -1.8
747,073 + -0.2
747,073 + -0.8
747,073 + -1.1
747,073 + -0.8
747,073 + +1.2
747,074 - -0.3
747,074 - -2.6
747,281 - RR42_RS24165 0.14 -0.1
747,410 + RR42_RS24165 0.27 +0.9
747,410 + RR42_RS24165 0.27 +1.0
747,490 + RR42_RS24165 0.34 +0.4
747,491 - RR42_RS24165 0.34 +0.2
747,491 - RR42_RS24165 0.34 -0.6
747,543 + RR42_RS24165 0.40 +0.4
747,544 - RR42_RS24165 0.40 +0.6
747,596 + RR42_RS24165 0.45 -0.4
747,597 - RR42_RS24165 0.45 +0.8
747,776 - RR42_RS24165 0.62 +1.9
747,859 + RR42_RS24165 0.70 -0.9
747,859 + RR42_RS24165 0.70 -0.3
747,860 - RR42_RS24165 0.70 +0.0
747,860 - RR42_RS24165 0.70 -0.3
747,860 - RR42_RS24165 0.70 -0.9
747,860 - RR42_RS24165 0.70 -0.0
747,911 + RR42_RS24165 0.75 +0.9
747,911 + RR42_RS24165 0.75 +0.0
747,911 + RR42_RS24165 0.75 -1.3
747,912 - RR42_RS24165 0.75 -0.1
747,912 - RR42_RS24165 0.75 -0.6
747,917 - RR42_RS24165 0.76 -1.1
747,917 - RR42_RS24165 0.76 +0.9
747,954 + RR42_RS24165 0.79 -0.3
748,017 + RR42_RS24165 0.86 -2.7
748,018 - RR42_RS24165 0.86 +0.5
748,074 + -0.8
748,295 + RR42_RS24170 0.12 +0.7
748,304 + RR42_RS24170 0.13 +1.5
748,304 + RR42_RS24170 0.13 -0.7
748,359 + RR42_RS24170 0.20 -1.3
748,449 - RR42_RS24170 0.30 +0.2
748,492 - RR42_RS24170 0.35 -0.3
748,754 - RR42_RS24170 0.66 +0.3
748,816 - RR42_RS24170 0.73 +0.8
748,816 - RR42_RS24170 0.73 -0.6
748,816 - RR42_RS24170 0.73 +1.8
748,877 + RR42_RS24170 0.80 -0.9
748,877 + RR42_RS24170 0.80 +1.4
748,878 - RR42_RS24170 0.80 -0.9
748,878 - RR42_RS24170 0.80 -1.5
748,878 - RR42_RS24170 0.80 +0.7
748,916 + RR42_RS24170 0.85 -0.3
748,916 + RR42_RS24170 0.85 +1.0
748,916 + RR42_RS24170 0.85 -0.3
748,938 + RR42_RS24170 0.87 -1.5
748,939 - RR42_RS24170 0.87 -0.2
748,979 + +0.7
748,979 + -0.9
749,045 + +0.6
749,046 - +0.0

Or see this region's nucleotide sequence