Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22720 and RR42_RS22725 are separated by 800 nucleotides RR42_RS22725 and RR42_RS22730 are separated by 480 nucleotides
RR42_RS22720: RR42_RS22720 - hypothetical protein, at 431,600 to 431,977
_RS22720
RR42_RS22725: RR42_RS22725 - phosphatidylethanolamine-binding protein, at 432,778 to 433,332
_RS22725
RR42_RS22730: RR42_RS22730 - pyridine nucleotide-disulfide oxidoreductase, at 433,813 to 435,018
_RS22730
Position (kb) 432
433
434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.013 kb on + strand at 432.031 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.034 kb on + strand at 432.035 kb on - strand at 432.035 kb on - strand at 432.035 kb on - strand at 432.035 kb on - strand at 432.035 kb on - strand at 432.046 kb on + strand at 432.095 kb on - strand at 432.095 kb on - strand at 432.125 kb on - strand at 432.125 kb on - strand at 432.148 kb on + strand at 432.148 kb on + strand at 432.149 kb on - strand at 432.193 kb on + strand at 432.194 kb on - strand at 432.300 kb on - strand at 432.494 kb on + strand at 432.495 kb on - strand at 432.495 kb on - strand at 432.536 kb on + strand at 432.536 kb on + strand at 432.613 kb on + strand at 432.614 kb on - strand at 432.626 kb on - strand at 432.631 kb on + strand at 432.650 kb on + strand at 432.651 kb on - strand at 432.651 kb on - strand at 432.684 kb on - strand at 432.715 kb on + strand at 432.715 kb on + strand at 432.715 kb on + strand at 432.744 kb on + strand at 432.847 kb on + strand, within RR42_RS22725 at 432.847 kb on + strand, within RR42_RS22725 at 432.847 kb on + strand, within RR42_RS22725 at 432.847 kb on + strand, within RR42_RS22725 at 432.910 kb on + strand, within RR42_RS22725 at 432.910 kb on + strand, within RR42_RS22725 at 432.921 kb on + strand, within RR42_RS22725 at 432.921 kb on + strand, within RR42_RS22725 at 432.921 kb on + strand, within RR42_RS22725 at 432.921 kb on + strand, within RR42_RS22725 at 432.922 kb on - strand, within RR42_RS22725 at 432.922 kb on - strand, within RR42_RS22725 at 432.922 kb on - strand, within RR42_RS22725 at 433.034 kb on + strand, within RR42_RS22725 at 433.039 kb on + strand, within RR42_RS22725 at 433.057 kb on + strand, within RR42_RS22725 at 433.059 kb on + strand, within RR42_RS22725 at 433.060 kb on - strand, within RR42_RS22725 at 433.139 kb on + strand, within RR42_RS22725 at 433.198 kb on + strand, within RR42_RS22725 at 433.198 kb on + strand, within RR42_RS22725 at 433.199 kb on - strand, within RR42_RS22725 at 433.199 kb on - strand, within RR42_RS22725 at 433.322 kb on - strand at 433.342 kb on + strand at 433.343 kb on - strand at 433.433 kb on + strand at 433.434 kb on - strand at 433.793 kb on - strand at 433.819 kb on - strand at 433.825 kb on - strand at 433.963 kb on + strand, within RR42_RS22730 at 434.116 kb on + strand, within RR42_RS22730 at 434.117 kb on - strand, within RR42_RS22730 at 434.117 kb on - strand, within RR42_RS22730 at 434.117 kb on - strand, within RR42_RS22730 at 434.117 kb on - strand, within RR42_RS22730 at 434.136 kb on + strand, within RR42_RS22730 at 434.233 kb on - strand, within RR42_RS22730 at 434.233 kb on - strand, within RR42_RS22730 at 434.274 kb on + strand, within RR42_RS22730 at 434.275 kb on - strand, within RR42_RS22730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 432,013 + -0.1 432,031 + -0.3 432,034 + +0.8 432,034 + +0.5 432,034 + +0.1 432,034 + +1.4 432,034 + +1.1 432,034 + +0.9 432,034 + +1.2 432,034 + -0.5 432,035 - +0.8 432,035 - +0.3 432,035 - -0.2 432,035 - -0.5 432,035 - +0.7 432,046 + +0.3 432,095 - -0.1 432,095 - +0.1 432,125 - +0.9 432,125 - -0.8 432,148 + +0.7 432,148 + +0.9 432,149 - -0.6 432,193 + +0.2 432,194 - +0.7 432,300 - -0.2 432,494 + -0.2 432,495 - +0.3 432,495 - +1.3 432,536 + -1.5 432,536 + +0.8 432,613 + +0.7 432,614 - -1.0 432,626 - -1.0 432,631 + +0.8 432,650 + -0.0 432,651 - -0.3 432,651 - -0.9 432,684 - +0.4 432,715 + -0.1 432,715 + +0.2 432,715 + -1.2 432,744 + +0.4 432,847 + RR42_RS22725 0.12 -0.6 432,847 + RR42_RS22725 0.12 +0.0 432,847 + RR42_RS22725 0.12 -1.3 432,847 + RR42_RS22725 0.12 +0.3 432,910 + RR42_RS22725 0.24 +0.4 432,910 + RR42_RS22725 0.24 -1.7 432,921 + RR42_RS22725 0.26 -0.1 432,921 + RR42_RS22725 0.26 +0.2 432,921 + RR42_RS22725 0.26 -2.0 432,921 + RR42_RS22725 0.26 -0.3 432,922 - RR42_RS22725 0.26 -1.1 432,922 - RR42_RS22725 0.26 -0.2 432,922 - RR42_RS22725 0.26 +0.8 433,034 + RR42_RS22725 0.46 +1.7 433,039 + RR42_RS22725 0.47 +1.2 433,057 + RR42_RS22725 0.50 +0.0 433,059 + RR42_RS22725 0.51 -1.7 433,060 - RR42_RS22725 0.51 +0.1 433,139 + RR42_RS22725 0.65 -0.7 433,198 + RR42_RS22725 0.76 -1.4 433,198 + RR42_RS22725 0.76 +0.2 433,199 - RR42_RS22725 0.76 +1.4 433,199 - RR42_RS22725 0.76 +1.4 433,322 - +0.2 433,342 + -1.2 433,343 - -1.0 433,433 + +0.0 433,434 - +0.7 433,793 - -0.6 433,819 - -0.7 433,825 - +0.0 433,963 + RR42_RS22730 0.12 +1.9 434,116 + RR42_RS22730 0.25 -1.8 434,117 - RR42_RS22730 0.25 -1.8 434,117 - RR42_RS22730 0.25 -1.4 434,117 - RR42_RS22730 0.25 +0.1 434,117 - RR42_RS22730 0.25 +0.1 434,136 + RR42_RS22730 0.27 +0.1 434,233 - RR42_RS22730 0.35 +1.0 434,233 - RR42_RS22730 0.35 -2.0 434,274 + RR42_RS22730 0.38 -0.0 434,275 - RR42_RS22730 0.38 +1.2
Or see this region's nucleotide sequence