Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22505 and RR42_RS22510 are separated by 6 nucleotides RR42_RS22510 and RR42_RS22515 are separated by 105 nucleotides
RR42_RS22505: RR42_RS22505 - LysR family transcriptional regulator, at 385,887 to 386,924
_RS22505
RR42_RS22510: RR42_RS22510 - ferredoxin, at 386,931 to 387,890
_RS22510
RR42_RS22515: RR42_RS22515 - branched-chain amino acid ABC transporter substrate-binding protein, at 387,996 to 389,132
_RS22515
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1 at 385.987 kb on - strand at 386.091 kb on + strand, within RR42_RS22505 at 386.092 kb on - strand, within RR42_RS22505 at 386.302 kb on - strand, within RR42_RS22505 at 386.310 kb on + strand, within RR42_RS22505 at 386.403 kb on + strand, within RR42_RS22505 at 386.403 kb on + strand, within RR42_RS22505 at 386.567 kb on - strand, within RR42_RS22505 at 386.683 kb on - strand, within RR42_RS22505 at 386.683 kb on - strand, within RR42_RS22505 at 386.947 kb on + strand at 386.948 kb on - strand at 387.162 kb on + strand, within RR42_RS22510 at 387.163 kb on - strand, within RR42_RS22510 at 387.166 kb on + strand, within RR42_RS22510 at 387.339 kb on + strand, within RR42_RS22510 at 387.339 kb on + strand, within RR42_RS22510 at 387.378 kb on - strand, within RR42_RS22510 at 387.489 kb on + strand, within RR42_RS22510 at 387.798 kb on + strand at 387.799 kb on - strand at 388.053 kb on - strand at 388.430 kb on + strand, within RR42_RS22515 at 388.431 kb on - strand, within RR42_RS22515 at 388.431 kb on - strand, within RR42_RS22515 at 388.557 kb on + strand, within RR42_RS22515 at 388.558 kb on - strand, within RR42_RS22515 at 388.686 kb on + strand, within RR42_RS22515 at 388.686 kb on + strand, within RR42_RS22515 at 388.687 kb on - strand, within RR42_RS22515 at 388.701 kb on + strand, within RR42_RS22515 at 388.711 kb on - strand, within RR42_RS22515 at 388.855 kb on - strand, within RR42_RS22515 at 388.867 kb on - strand, within RR42_RS22515 at 388.875 kb on - strand, within RR42_RS22515
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 385,987 - -1.3 386,091 + RR42_RS22505 0.20 -0.4 386,092 - RR42_RS22505 0.20 -0.2 386,302 - RR42_RS22505 0.40 +0.5 386,310 + RR42_RS22505 0.41 +0.1 386,403 + RR42_RS22505 0.50 -1.0 386,403 + RR42_RS22505 0.50 -0.7 386,567 - RR42_RS22505 0.66 -1.9 386,683 - RR42_RS22505 0.77 +0.8 386,683 - RR42_RS22505 0.77 +0.3 386,947 + -0.3 386,948 - +0.2 387,162 + RR42_RS22510 0.24 +0.4 387,163 - RR42_RS22510 0.24 -0.2 387,166 + RR42_RS22510 0.24 -1.8 387,339 + RR42_RS22510 0.42 -0.2 387,339 + RR42_RS22510 0.42 -1.6 387,378 - RR42_RS22510 0.47 -0.7 387,489 + RR42_RS22510 0.58 +0.1 387,798 + +0.8 387,799 - +1.4 388,053 - -0.1 388,430 + RR42_RS22515 0.38 +0.4 388,431 - RR42_RS22515 0.38 +0.8 388,431 - RR42_RS22515 0.38 +0.8 388,557 + RR42_RS22515 0.49 -1.2 388,558 - RR42_RS22515 0.49 +0.6 388,686 + RR42_RS22515 0.61 +0.1 388,686 + RR42_RS22515 0.61 -0.3 388,687 - RR42_RS22515 0.61 +1.5 388,701 + RR42_RS22515 0.62 -0.9 388,711 - RR42_RS22515 0.63 +0.7 388,855 - RR42_RS22515 0.76 +0.4 388,867 - RR42_RS22515 0.77 +0.4 388,875 - RR42_RS22515 0.77 +1.4
Or see this region's nucleotide sequence