Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20875 and RR42_RS20880 are separated by 337 nucleotides RR42_RS20880 and RR42_RS20885 are separated by 99 nucleotides
RR42_RS20875: RR42_RS20875 - LuxR family transcriptional regulator, at 7,230 to 8,090
_RS20875
RR42_RS20880: RR42_RS20880 - hypothetical protein, at 8,428 to 8,877
_RS20880
RR42_RS20885: RR42_RS20885 - hypothetical protein, at 8,977 to 9,243
_RS20885
Position (kb) 8
9 Strain fitness (log2 ratio) -2
-1
0
1 at 7.691 kb on + strand, within RR42_RS20875 at 7.691 kb on + strand, within RR42_RS20875 at 7.692 kb on - strand, within RR42_RS20875 at 7.692 kb on - strand, within RR42_RS20875 at 7.811 kb on + strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.817 kb on + strand, within RR42_RS20875 at 7.831 kb on - strand, within RR42_RS20875 at 7.972 kb on - strand, within RR42_RS20875 at 8.096 kb on - strand at 8.211 kb on + strand at 8.211 kb on + strand at 8.310 kb on - strand at 8.325 kb on - strand at 8.325 kb on - strand at 8.383 kb on - strand at 8.561 kb on + strand, within RR42_RS20880 at 8.562 kb on - strand, within RR42_RS20880 at 8.707 kb on + strand, within RR42_RS20880 at 8.707 kb on + strand, within RR42_RS20880 at 8.864 kb on - strand at 8.900 kb on + strand at 8.901 kb on - strand at 9.094 kb on + strand, within RR42_RS20885 at 9.095 kb on - strand, within RR42_RS20885 at 9.122 kb on - strand, within RR42_RS20885 at 9.154 kb on - strand, within RR42_RS20885 at 9.154 kb on - strand, within RR42_RS20885 at 9.227 kb on - strand at 9.286 kb on + strand at 9.361 kb on + strand at 9.362 kb on - strand at 9.362 kb on - strand at 9.681 kb on - strand at 9.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 7,691 + RR42_RS20875 0.54 -1.5 7,691 + RR42_RS20875 0.54 -1.6 7,692 - RR42_RS20875 0.54 +0.4 7,692 - RR42_RS20875 0.54 +0.3 7,811 + RR42_RS20875 0.67 +0.4 7,812 - RR42_RS20875 0.68 +0.1 7,812 - RR42_RS20875 0.68 -1.0 7,812 - RR42_RS20875 0.68 -0.0 7,814 + RR42_RS20875 0.68 +1.5 7,814 + RR42_RS20875 0.68 -0.6 7,814 + RR42_RS20875 0.68 -0.4 7,817 + RR42_RS20875 0.68 -0.9 7,831 - RR42_RS20875 0.70 -1.1 7,972 - RR42_RS20875 0.86 +0.1 8,096 - -1.6 8,211 + -0.2 8,211 + +0.3 8,310 - -2.7 8,325 - -2.3 8,325 - -0.5 8,383 - -0.0 8,561 + RR42_RS20880 0.30 -2.1 8,562 - RR42_RS20880 0.30 +0.3 8,707 + RR42_RS20880 0.62 -0.6 8,707 + RR42_RS20880 0.62 +1.1 8,864 - +0.4 8,900 + +0.4 8,901 - +0.2 9,094 + RR42_RS20885 0.44 +0.3 9,095 - RR42_RS20885 0.44 +0.1 9,122 - RR42_RS20885 0.54 +1.7 9,154 - RR42_RS20885 0.66 -0.8 9,154 - RR42_RS20885 0.66 +0.1 9,227 - -0.2 9,286 + -0.9 9,361 + +0.1 9,362 - +1.4 9,362 - +0.4 9,681 - -0.1 9,698 - -0.7
Or see this region's nucleotide sequence