Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19455

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19450 and RR42_RS19455 are separated by 10 nucleotidesRR42_RS19455 and RR42_RS19460 are separated by 417 nucleotides RR42_RS19450: RR42_RS19450 - potassium transporter KefC, at 4,201,067 to 4,202,881 _RS19450 RR42_RS19455: RR42_RS19455 - NAD(P)H dehydrogenase, at 4,202,892 to 4,203,473 _RS19455 RR42_RS19460: RR42_RS19460 - GCN5 family acetyltransferase, at 4,203,891 to 4,204,589 _RS19460 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4201.895 kb on + strand, within RR42_RS19450at 4201.895 kb on + strand, within RR42_RS19450at 4201.896 kb on - strand, within RR42_RS19450at 4201.896 kb on - strand, within RR42_RS19450at 4201.896 kb on - strand, within RR42_RS19450at 4202.009 kb on + strand, within RR42_RS19450at 4202.034 kb on - strand, within RR42_RS19450at 4202.034 kb on - strand, within RR42_RS19450at 4202.216 kb on - strand, within RR42_RS19450at 4202.216 kb on - strand, within RR42_RS19450at 4202.271 kb on + strand, within RR42_RS19450at 4202.778 kb on + strandat 4202.779 kb on - strandat 4202.779 kb on - strandat 4202.970 kb on - strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.076 kb on + strand, within RR42_RS19455at 4203.077 kb on - strand, within RR42_RS19455at 4203.077 kb on - strand, within RR42_RS19455at 4203.077 kb on - strand, within RR42_RS19455at 4203.077 kb on - strand, within RR42_RS19455at 4203.116 kb on - strand, within RR42_RS19455at 4203.116 kb on - strand, within RR42_RS19455at 4203.190 kb on + strand, within RR42_RS19455at 4203.191 kb on - strand, within RR42_RS19455at 4203.250 kb on + strand, within RR42_RS19455at 4203.250 kb on + strand, within RR42_RS19455at 4203.250 kb on + strand, within RR42_RS19455at 4203.251 kb on - strand, within RR42_RS19455at 4203.251 kb on - strand, within RR42_RS19455at 4203.251 kb on - strand, within RR42_RS19455at 4203.312 kb on + strand, within RR42_RS19455at 4203.312 kb on + strand, within RR42_RS19455at 4203.329 kb on - strand, within RR42_RS19455at 4203.335 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.337 kb on + strand, within RR42_RS19455at 4203.338 kb on - strand, within RR42_RS19455at 4203.338 kb on - strand, within RR42_RS19455at 4203.338 kb on - strand, within RR42_RS19455at 4203.346 kb on + strand, within RR42_RS19455at 4203.347 kb on - strand, within RR42_RS19455at 4203.347 kb on - strand, within RR42_RS19455at 4203.436 kb on + strandat 4203.436 kb on + strandat 4203.437 kb on - strandat 4203.437 kb on - strandat 4203.437 kb on - strandat 4203.437 kb on - strandat 4203.437 kb on - strandat 4203.437 kb on - strandat 4203.440 kb on + strandat 4203.440 kb on + strandat 4203.531 kb on + strandat 4203.531 kb on + strandat 4203.531 kb on + strandat 4203.531 kb on + strandat 4203.531 kb on + strandat 4203.531 kb on + strandat 4203.532 kb on - strandat 4203.532 kb on - strandat 4203.686 kb on + strandat 4203.686 kb on + strandat 4203.687 kb on - strandat 4203.697 kb on - strandat 4203.742 kb on + strandat 4203.742 kb on + strandat 4203.743 kb on - strandat 4203.743 kb on - strandat 4203.764 kb on + strandat 4203.807 kb on - strandat 4203.807 kb on - strandat 4203.807 kb on - strandat 4203.855 kb on + strandat 4203.855 kb on + strandat 4203.856 kb on - strandat 4203.856 kb on - strandat 4203.861 kb on + strandat 4203.861 kb on + strandat 4203.871 kb on + strandat 4203.871 kb on + strandat 4203.872 kb on - strandat 4203.872 kb on - strandat 4203.872 kb on - strandat 4204.110 kb on + strand, within RR42_RS19460at 4204.273 kb on + strand, within RR42_RS19460at 4204.274 kb on - strand, within RR42_RS19460at 4204.274 kb on - strand, within RR42_RS19460at 4204.335 kb on + strand, within RR42_RS19460at 4204.335 kb on + strand, within RR42_RS19460at 4204.336 kb on - strand, within RR42_RS19460at 4204.405 kb on - strand, within RR42_RS19460at 4204.405 kb on - strand, within RR42_RS19460at 4204.428 kb on + strand, within RR42_RS19460at 4204.429 kb on - strand, within RR42_RS19460

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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4,201,895 + RR42_RS19450 0.46 -0.1
4,201,895 + RR42_RS19450 0.46 +0.2
4,201,896 - RR42_RS19450 0.46 +0.7
4,201,896 - RR42_RS19450 0.46 +0.1
4,201,896 - RR42_RS19450 0.46 -0.4
4,202,009 + RR42_RS19450 0.52 -1.7
4,202,034 - RR42_RS19450 0.53 +1.1
4,202,034 - RR42_RS19450 0.53 -2.8
4,202,216 - RR42_RS19450 0.63 +0.5
4,202,216 - RR42_RS19450 0.63 +1.4
4,202,271 + RR42_RS19450 0.66 +0.5
4,202,778 + +0.7
4,202,779 - -0.1
4,202,779 - +1.1
4,202,970 - RR42_RS19455 0.13 +0.1
4,203,076 + RR42_RS19455 0.32 +0.4
4,203,076 + RR42_RS19455 0.32 -1.1
4,203,076 + RR42_RS19455 0.32 -0.1
4,203,076 + RR42_RS19455 0.32 +0.2
4,203,076 + RR42_RS19455 0.32 -0.7
4,203,076 + RR42_RS19455 0.32 -0.5
4,203,077 - RR42_RS19455 0.32 +2.9
4,203,077 - RR42_RS19455 0.32 -0.5
4,203,077 - RR42_RS19455 0.32 -0.2
4,203,077 - RR42_RS19455 0.32 -2.1
4,203,116 - RR42_RS19455 0.38 +0.9
4,203,116 - RR42_RS19455 0.38 +1.5
4,203,190 + RR42_RS19455 0.51 -2.4
4,203,191 - RR42_RS19455 0.51 -0.0
4,203,250 + RR42_RS19455 0.62 +0.4
4,203,250 + RR42_RS19455 0.62 -0.9
4,203,250 + RR42_RS19455 0.62 +0.9
4,203,251 - RR42_RS19455 0.62 -1.8
4,203,251 - RR42_RS19455 0.62 +0.1
4,203,251 - RR42_RS19455 0.62 +1.8
4,203,312 + RR42_RS19455 0.72 +0.1
4,203,312 + RR42_RS19455 0.72 -1.1
4,203,329 - RR42_RS19455 0.75 +1.4
4,203,335 + RR42_RS19455 0.76 +0.0
4,203,337 + RR42_RS19455 0.76 -0.5
4,203,337 + RR42_RS19455 0.76 +0.2
4,203,337 + RR42_RS19455 0.76 -1.8
4,203,337 + RR42_RS19455 0.76 -0.3
4,203,337 + RR42_RS19455 0.76 -1.5
4,203,337 + RR42_RS19455 0.76 -1.6
4,203,337 + RR42_RS19455 0.76 -0.2
4,203,337 + RR42_RS19455 0.76 -0.2
4,203,337 + RR42_RS19455 0.76 -0.6
4,203,337 + RR42_RS19455 0.76 -1.4
4,203,338 - RR42_RS19455 0.77 -0.6
4,203,338 - RR42_RS19455 0.77 +0.4
4,203,338 - RR42_RS19455 0.77 -1.6
4,203,346 + RR42_RS19455 0.78 +0.4
4,203,347 - RR42_RS19455 0.78 -0.5
4,203,347 - RR42_RS19455 0.78 -0.3
4,203,436 + -0.6
4,203,436 + +0.9
4,203,437 - -2.2
4,203,437 - +1.0
4,203,437 - +0.3
4,203,437 - -0.3
4,203,437 - -2.1
4,203,437 - -2.1
4,203,440 + -0.9
4,203,440 + -0.1
4,203,531 + +0.4
4,203,531 + +0.9
4,203,531 + +0.4
4,203,531 + -1.5
4,203,531 + -0.3
4,203,531 + +1.1
4,203,532 - +1.3
4,203,532 - -0.2
4,203,686 + -0.4
4,203,686 + +2.5
4,203,687 - -2.0
4,203,697 - +1.3
4,203,742 + +0.1
4,203,742 + +0.3
4,203,743 - +0.8
4,203,743 - +1.2
4,203,764 + +1.2
4,203,807 - -0.3
4,203,807 - +0.6
4,203,807 - -1.6
4,203,855 + -2.1
4,203,855 + -0.4
4,203,856 - -0.6
4,203,856 - +0.4
4,203,861 + -1.3
4,203,861 + -0.1
4,203,871 + -1.3
4,203,871 + -0.6
4,203,872 - +0.6
4,203,872 - +0.1
4,203,872 - -1.3
4,204,110 + RR42_RS19460 0.31 -0.0
4,204,273 + RR42_RS19460 0.55 -1.5
4,204,274 - RR42_RS19460 0.55 -0.4
4,204,274 - RR42_RS19460 0.55 -0.5
4,204,335 + RR42_RS19460 0.64 -2.0
4,204,335 + RR42_RS19460 0.64 +0.8
4,204,336 - RR42_RS19460 0.64 -0.0
4,204,405 - RR42_RS19460 0.74 -0.0
4,204,405 - RR42_RS19460 0.74 -0.2
4,204,428 + RR42_RS19460 0.77 +1.0
4,204,429 - RR42_RS19460 0.77 +1.3

Or see this region's nucleotide sequence